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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
1
candidate regulatory elements
1
chromatin state
Annotation Category
3
Target gene links
2
cis-regulatory elements
Annotation type Category
3
ChIP-seq
3
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
4
in vitro differentiated cells
1
stem cell
Biosample term
126
monocyte
67
heart
62
HeLa-S3
61
stomach
56
A549
55
brain
55
kidney
51
H1-hESC
51
lung
50
muscle of arm
48
small intestine
47
adrenal gland
44
neural progenitor cell
44
placenta
43
CD8-positive, alpha-beta T cell
43
muscle of leg
40
common myeloid progenitor, CD34-positive
40
large intestine
39
left lung
39
liver
39
muscle of back
37
K562
36
thymus
35
B cell
35
islet of Langerhans
34
endothelial cell
34
retina
33
right lung
32
right kidney
31
hematopoietic multipotent progenitor cell
30
hepatocyte
29
fibroblast
29
renal cortex interstitium
29
renal pelvis
28
macrophage
27
CD14-positive monocyte
27
CD4-positive, alpha-beta memory T cell
27
adipose tissue
27
heart left ventricle
27
left kidney
24
smooth muscle cell
24
spinal cord
23
spleen
22
T cell
22
pericyte cell
22
regulatory T cell
21
CD8-positive, alpha-beta memory T cell
21
EndoC_BH1
21
adipocyte
21
tibial nerve
20
body of pancreas
20
pancreatic ductal cell
20
pigmented layer of retina
19
HFFc6
19
T-helper 1 cell
19
T-helper 17 cell
19
coronary artery
17
MCF-7
17
caudate nucleus
17
mononuclear cell
17
pancreatic beta cell
17
right atrium auricular region
17
trophoblast cell
16
endothelial cell of hepatic sinusoid
16
heart right ventricle
16
psoas muscle
16
sigmoid colon
16
tibial artery
15
T-helper 2 cell
15
astrocyte
15
natural killer cell
15
ovary
15
pancreas
15
pancreatic acinar cell
15
pancreatic delta cell
15
subcutaneous adipose tissue
14
cerebellum
14
frontal cortex
14
mesenchymal stem cell
14
pancreatic alpha cell
14
thyroid gland
13
ascending aorta
13
embryonic stem cell
13
endothelial cell of umbilical vein
13
excitatory neuron
13
fibroblast of lung
13
gastrocnemius medialis
13
neutrophil
13
omental fat pad
13
substantia nigra
12
GM12878
12
HepG2
12
chorionic villus
12
endocrine pancreas
12
fibroblast of cardiac tissue
12
muscle of trunk
12
skeletal muscle satellite cell
12
transverse colon
11
aorta
11
erythroblast
11
fibroblast of dermis
11
foreskin keratinocyte
11
keratinocyte
11
mammary gland epithelial cell
11
retinal pigment epithelial cell
10
Ammon's horn
10
H9
10
left cardiac atrium
10
pancreatic stellate cell
10
putamen
10
skeletal muscle myoblast
10
skeletal muscle tissue
10
testis
9
Peyer's patch
9
colon epithelial cell
9
layer of hippocampus
8
SK-N-SH
8
angular gyrus
8
chorion membrane
8
foreskin fibroblast
8
immortal human breast epithelial cell line cell
8
lymphocyte
8
naive T cell
8
pituitary stalk
8
progenitor cell of endocrine pancreas
8
skeletal muscle fiber
8
temporal lobe
8
thoracic aorta
8
upper lobe of left lung
7
CD4-positive, alpha-beta T cell
7
breast epithelium
7
cardiac muscle cell
7
cingulate gyrus
7
endometrium adenocarcinoma
7
esophagus
7
extended pluripotent stem (EPS) cells
7
kidney tubule cell
7
memory B cell
7
naive thymus-derived CD4-positive, alpha-beta T cell
6
22Rv1
6
Brodmann (1909) area 46
6
LNCaP clone FGC
6
NAMALWA cell
6
SK-N-DZ
6
T47D
6
alternatively activated macrophage
6
amygdala
6
anterior cingulate cortex
6
cardiomyocytes (cardiac muscle cell)
6
choroid plexus epithelial cell
6
colonic mucosa
6
duodenal mucosa
6
esophagus squamous epithelium
6
glomerular endothelial cell
6
hepatic stellate cell
6
induced pluripotent stem cell
6
left renal cortex interstitium
6
left renal pelvis
6
lymphoblastoid cell line
6
mucosa of rectum
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neurosphere
6
osteoblast
6
right lobe of liver
6
right renal pelvis
6
skin fibroblast
6
trophoblast
6
type I muscle cell
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
Life stage
3
embryonic
Date released
February, 2021
3
September, 2022
June, 2020
1
March, 2020
1
May, 2021
Software used
2
r
1
abc
1
chromhmm
1
nospecificsoft_customcode
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
biosample_term_name!
fibroblast of pulmonary artery
month_released!
February, 2021
June, 2020
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP