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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
binding sites
chromatin state
1
histone modifications
Annotation Category
5
cis-regulatory elements
3
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
5
in vitro differentiated cells
Biosample term
105
monocyte
44
heart
44
stomach
42
CD8-positive, alpha-beta T cell
42
kidney
35
brain
35
neural progenitor cell
34
muscle of arm
33
lung
31
retina
30
placenta
30
small intestine
29
adrenal gland
29
muscle of leg
28
large intestine
27
common myeloid progenitor, CD34-positive
27
muscle of back
26
left lung
25
A549
24
B cell
23
right lung
22
hematopoietic multipotent progenitor cell
22
thymus
21
renal cortex interstitium
21
renal pelvis
21
right kidney
20
breast cancer cell
20
fibroblast
20
pigmented layer of retina
19
spinal cord
18
endothelial cell
18
left kidney
18
liver
17
spleen
16
hepatocyte
15
MCF-7
15
heart left ventricle
15
macrophage
14
CD4-positive, alpha-beta memory T cell
14
foreskin fibroblast
14
foreskin keratinocyte
14
retinal pigment epithelial cell
12
HepG2
12
cardiac muscle cell
12
excitatory neuron
12
neuroblastoma cell
11
K562
11
T cell
11
embryonic stem cell
11
endothelial cell of hepatic sinusoid
11
keratinocyte
11
pancreas
11
pericyte cell
10
EndoC_BH1
10
Rhabdomyosarcoma
10
adipocyte
10
gastric cancer cell
10
mammary epithelial cell
10
natural killer cell
10
osteoblast
10
pancreatic ductal cell
10
regulatory T cell
10
sigmoid colon
10
smooth muscle cell
10
trophoblast cell
10
upper lobe of left lung
9
CD4-positive, alpha-beta T cell
9
adipose tissue
9
astrocyte
9
diffuse intrinsic pontine glioma
9
fibroblast of cardiac tissue
9
liposarcoma
9
mesenchymal stem cell
9
neuronal stem cell
8
CD14-positive monocyte
8
CD8-positive, alpha-beta memory T cell
8
Peyer's patch
8
T-helper 1 cell
8
bronchial epithelial cell
8
caudate nucleus
8
endothelial cell of umbilical vein
8
ovary
8
pancreatic beta cell
8
psoas muscle
8
skeletal muscle myoblast
8
thyroid gland
8
tibial nerve
8
transverse colon
7
B-lymphoblastoid cell line
7
H9
7
HEK293
7
body of pancreas
7
chorionic villus
7
esophageal adenocarcinoma
7
fibroblast cell line
7
fibroblast of lung
7
gastrocnemius medialis
7
islet of Langerhans
7
mononuclear cell
7
pancreatic acinar cell
7
prostate gland
7
testis
6
22Rv1
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
GM12865
6
GM12878
6
HL-60
6
HeLa-S3
6
IMR-90
6
Rh-4 cell
6
SGBS preadipocytes
6
chondrocyte
6
choroid plexus epithelial cell
6
hESC cell
6
layer of hippocampus
6
mammary gland epithelial cell
6
neuroblastoma cell line
6
neurosphere
6
right renal pelvis
6
skeletal muscle satellite cell
6
skeletal muscle tissue
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
BE(2)-C
5
BJ cell
5
CD1c-positive myeloid dendritic cell
5
CMK
5
Caco-2 cell
5
Ewing sarcoma
5
GM12875
5
GM19240
5
GM23248
5
H1-hESC
5
HAP-1
5
HT-29
5
Jurkat
5
LHCN-M2
5
LNCAP
5
MG63
5
MM.1S
5
NAMALWA cell
5
OCI-LY7
5
PC-3
5
PC-9
5
RWPE1
5
SK-N-MC
5
SW480
5
T-helper 17 cell
5
T-helper 2 cell
5
WERI-Rb-1
5
acute myeloid leukemia
5
erythroblast
5
esophagus muscularis mucosa
5
esophagus squamous epithelium
5
heart right ventricle
5
hepatic stellate cell
5
kidney tubule cell
5
left renal cortex interstitium
5
lymphoblastoid cell line
5
muscle of trunk
5
omental fat pad
5
osteosarcoma
5
prostate cancer cell line
5
skin fibroblast
5
substantia nigra
5
temporal lobe
4
Ammon's horn
4
B-lymphocyte
4
COLO205
4
Daoy
4
GM08714
4
GM10248
4
GM10266
4
GM12873
4
GM12891
4
GM12892
4
GM19238
4
GM19239
4
HAC cell
4
HBMEC cell
4
HCT-116 cell
4
HS-SY-2 cell
4
HUES6
4
HuH-7
4
Ishikawa
4
KARPAS-422 cell
4
KBM-7
4
LoVo cell
4
Mantle cell lymphoma
4
NHEK
4
NT2-D1 cell
4
OCI-LY1
4
PANC-1 cell
4
RPMI8226
4
RS4-11 cell
Life stage
2
embryonic
Date released
3
February, 2021
1
June, 2020
1
September, 2022
Software used
3
macs
1
encode-ccres
1
r
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
biosample_term_name!
glomerular visceral epithelial cell
annotation_type!
chromatin state
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP