Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
1
binding sites
1
histone modifications
Annotation Category
5
cis-regulatory elements
2
Target gene links
Annotation type Category
5
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
pCHi-C
Available data
7
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
7
in vitro differentiated cells
Biosample term
130
monocyte
69
heart
67
stomach
65
kidney
60
HeLa-S3
55
brain
51
H1-hESC
51
lung
51
muscle of arm
49
CD8-positive, alpha-beta T cell
47
adrenal gland
47
small intestine
46
neural progenitor cell
46
placenta
43
A549
43
large intestine
43
muscle of leg
41
common myeloid progenitor, CD34-positive
41
endothelial cell
41
islet of Langerhans
41
muscle of back
39
left lung
39
liver
37
retina
35
B cell
35
hepatocyte
35
thymus
34
right lung
33
K562
33
hematopoietic multipotent progenitor cell
32
right kidney
31
fibroblast
31
macrophage
31
renal cortex interstitium
31
renal pelvis
27
CD14-positive monocyte
27
left kidney
27
spinal cord
27
spleen
25
heart left ventricle
25
pancreatic ductal cell
25
regulatory T cell
24
adipose tissue
24
smooth muscle cell
23
CD4-positive, alpha-beta memory T cell
23
EndoC_BH1
21
epithelial cell of proximal tubule
21
pericyte cell
21
tibial nerve
20
MCF-7
20
adipocyte
20
body of pancreas
20
breast cancer cell
20
glomerular endothelial cell
20
natural killer cell
20
pigmented layer of retina
20
subcutaneous adipose tissue
19
T-helper 1 cell
18
HFFc6
18
T cell
18
T-helper 17 cell
18
foreskin keratinocyte
18
pancreas
18
pancreatic beta cell
17
caudate nucleus
17
coronary artery
17
keratinocyte
17
pancreatic acinar cell
17
pancreatic alpha cell
17
right atrium auricular region
17
trophoblast cell
16
astrocyte
16
endothelial cell of hepatic sinusoid
16
induced pluripotent stem cell
16
ovary
16
sigmoid colon
15
CD8-positive, alpha-beta memory T cell
15
cardiac muscle cell
15
foreskin fibroblast
15
mesenchymal stem cell
15
omental fat pad
15
pancreatic delta cell
15
substantia nigra
15
transverse colon
14
gastrocnemius medialis
14
mononuclear cell
14
osteoblast
14
psoas muscle
14
retinal pigment epithelial cell
14
testis
14
thyroid gland
14
tibial artery
13
GM12878
13
H9
13
T-helper 2 cell
13
endothelial cell of umbilical vein
13
excitatory neuron
13
fibroblast of cardiac tissue
13
frontal cortex
13
putamen
13
skeletal muscle tissue
13
upper lobe of left lung
12
HepG2
12
ascending aorta
12
cerebellum
12
embryonic stem cell
12
heart right ventricle
12
layer of hippocampus
12
lymphoblastoid cell line
12
muscle of trunk
12
neuroblastoma cell
12
neutrophil
12
prostate gland
11
chorionic villus
mammary epithelial cell
11
mammary gland epithelial cell
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
skeletal muscle myoblast
10
Ammon's horn
10
CD4-positive, alpha-beta T cell
10
Peyer's patch
10
Rhabdomyosarcoma
10
bronchial epithelial cell
10
endocrine pancreas
10
gastric cancer cell
10
glomerular visceral epithelial cell
10
left renal cortex interstitium
10
neuronal stem cell
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
right renal pelvis
10
skeletal muscle satellite cell
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
epithelial cell of prostate
9
fibroblast of lung
9
left renal pelvis
9
liposarcoma
9
lymphocyte
9
neurosphere
9
skin fibroblast
8
22Rv1
8
breast epithelium
8
hepatic stellate cell
8
pituitary stalk
8
skeletal muscle fiber
7
B-lymphoblastoid cell line
7
CD4-positive helper T cell
7
amygdala
7
aorta
7
choroid plexus epithelial cell
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
extended pluripotent stem (EPS) cells
7
fibroblast cell line
7
fibroblast of dermis
7
kidney tubule cell
7
lower leg skin
7
memory B cell
7
temporal lobe
7
thoracic aorta
7
trophoblast
6
CD1c-positive myeloid dendritic cell
6
Chondroid Chordoma
6
GM12865
6
HAP-1
6
HT-29
6
HUES8
6
Jurkat
6
LNCAP
6
NAMALWA cell
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
cardiomyocytes (cardiac muscle cell)
6
chondrocyte
6
colon epithelial cell
6
endometrium adenocarcinoma
6
erythroblast
6
esophagus
6
eye
6
fibroblast of pulmonary artery
6
globus pallidus
6
hESC cell
6
hypothalamus
6
iPSC derived cell line
6
immortal human breast epithelial cell line cell
6
neuroblastoma cell line
6
nucleus accumbens
6
occipital lobe
6
parathyroid adenoma
6
plasma cell
6
renal cortical epithelial cell
6
right renal cortex interstitium
6
smooth muscle cell of the coronary artery
6
tongue
6
type I muscle cell
6
uterus
5
cardiac fibroblast
5
AG04449 cell
Life stage
3
embryonic
Date released
3
February, 2021
2
September, 2022
1
June, 2020
1
May, 2021
Software used
3
macs
2
r
1
abc
chromhmm
1
encode-ccres
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
biosample_term_name!
mammary epithelial cell
annotation_type_category!
pCHi-C
software_used.software.name!
chromhmm
Showing 7 of 7 results
table-tab-icon
matrix-icon
Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP