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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
accessible chromatin
binding sites
1
histone modifications
Annotation Category
4
cis-regulatory elements
3
Target gene links
Annotation type Category
5
DNase-seq
4
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
7
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
6
in vitro differentiated cells
1
stem cell
Biosample term
130
monocyte
68
heart
67
stomach
64
kidney
60
HeLa-S3
54
brain
52
lung
51
muscle of arm
50
CD8-positive, alpha-beta T cell
50
H1-hESC
48
adrenal gland
48
small intestine
45
placenta
43
large intestine
43
muscle of leg
43
neural progenitor cell
42
A549
41
common myeloid progenitor, CD34-positive
41
muscle of back
40
islet of Langerhans
39
endothelial cell
39
left lung
39
liver
36
B cell
36
retina
36
thymus
34
hepatocyte
34
right lung
32
K562
32
hematopoietic multipotent progenitor cell
32
right kidney
31
macrophage
31
renal cortex interstitium
31
renal pelvis
30
fibroblast
27
CD14-positive monocyte
27
left kidney
27
spleen
26
heart left ventricle
26
spinal cord
24
adipose tissue
24
regulatory T cell
24
smooth muscle cell
23
CD4-positive, alpha-beta memory T cell
23
pancreatic ductal cell
22
EndoC_BH1
21
epithelial cell of proximal tubule
21
pericyte cell
21
tibial nerve
20
body of pancreas
20
glomerular endothelial cell
20
natural killer cell
20
pigmented layer of retina
20
subcutaneous adipose tissue
19
HFFc6
19
T-helper 1 cell
19
adipocyte
18
MCF-7
18
T cell
18
T-helper 17 cell
18
pancreatic beta cell
17
caudate nucleus
17
coronary artery
17
foreskin keratinocyte
17
ovary
pancreas
17
pancreatic acinar cell
17
pancreatic alpha cell
17
right atrium auricular region
17
sigmoid colon
17
trophoblast cell
16
astrocyte
16
induced pluripotent stem cell
15
CD8-positive, alpha-beta memory T cell
15
H9
15
omental fat pad
15
pancreatic delta cell
15
psoas muscle
15
substantia nigra
15
transverse colon
14
gastrocnemius medialis
14
keratinocyte
14
mesenchymal stem cell
14
thyroid gland
14
tibial artery
13
T-helper 2 cell
13
excitatory neuron
13
foreskin fibroblast
13
frontal cortex
13
heart right ventricle
13
mononuclear cell
13
neutrophil
13
putamen
13
skeletal muscle tissue
13
testis
12
CD4-positive, alpha-beta T cell
12
GM12878
12
ascending aorta
12
cardiac muscle cell
12
cerebellum
12
endothelial cell of umbilical vein
12
fibroblast of cardiac tissue
12
muscle of trunk
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
osteoblast
12
retinal pigment epithelial cell
11
Ammon's horn
11
HepG2
11
breast cancer cell
11
chorionic villus
11
skeletal muscle myoblast
11
upper lobe of left lung
10
Peyer's patch
10
endocrine pancreas
10
glomerular visceral epithelial cell
10
layer of hippocampus
10
left renal cortex interstitium
10
lymphoblastoid cell line
10
pancreatic stellate cell
10
right renal pelvis
10
skeletal muscle satellite cell
9
cardiomyocytes
9
endothelial cell of hepatic sinusoid
9
fibroblast of lung
9
left renal pelvis
9
lymphocyte
9
mammary gland epithelial cell
9
neurosphere
9
progenitor cell of endocrine pancreas
9
prostate gland
8
Rhabdomyosarcoma
8
aorta
8
breast epithelium
8
embryonic stem cell
8
esophagus
8
gastric cancer cell
8
pituitary stalk
8
skeletal muscle fiber
8
skin fibroblast
7
22Rv1
7
B-lymphoblastoid cell line
7
CD4-positive helper T cell
7
amygdala
7
bronchial epithelial cell
7
cardiomyocytes (cardiac muscle cell)
7
epithelial cell of prostate
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
extended pluripotent stem (EPS) cells
7
fibroblast of dermis
7
kidney tubule cell
7
lower leg skin
7
mammary epithelial cell
7
memory B cell
7
neuroblastoma cell
7
temporal lobe
7
thoracic aorta
7
trophoblast
6
Chondroid Chordoma
6
HAP-1
6
HEK293
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
choroid plexus epithelial cell
6
colon epithelial cell
6
diffuse intrinsic pontine glioma
6
endometrium adenocarcinoma
6
erythroblast
6
eye
6
globus pallidus
6
hepatic stellate cell
6
hypothalamus
6
immortal human breast epithelial cell line cell
6
mesendoderm
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuronal stem cell
6
nucleus accumbens
6
occipital lobe
6
parathyroid adenoma
6
renal cortical epithelial cell
6
right renal cortex interstitium
6
tongue
6
type I muscle cell
6
uterus
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD1c-positive myeloid dendritic cell
5
CMK
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
Life stage
3
embryonic
Date released
2
February, 2021
2
September, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
2
macs
2
r
1
abc
chromhmm
1
encode-ccres
1
nospecificsoft_customcode
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
biosample_term_name!
pancreas
software_used.software.name!
chromhmm
annotation_type!
binding sites
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP