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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
histone modifications
Annotation Category
5
cis-regulatory elements
3
Target gene links
Annotation type Category
5
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
8
hg19
Organism
8
Homo sapiens
Biosample type
7
in vitro differentiated cells
1
stem cell
Biosample term
131
monocyte
69
heart
67
stomach
65
kidney
60
HeLa-S3
55
brain
52
lung
51
H1-hESC
51
muscle of arm
50
CD8-positive, alpha-beta T cell
48
adrenal gland
48
small intestine
47
neural progenitor cell
46
placenta
43
A549
43
large intestine
43
muscle of leg
42
islet of Langerhans
41
common myeloid progenitor, CD34-positive
41
endothelial cell
41
muscle of back
40
liver
39
left lung
37
retina
37
thymus
36
B cell
35
hepatocyte
34
right lung
33
K562
33
hematopoietic multipotent progenitor cell
32
macrophage
32
right kidney
31
fibroblast
31
renal cortex interstitium
31
renal pelvis
28
spleen
27
CD14-positive monocyte
27
left kidney
27
spinal cord
26
heart left ventricle
25
adipose tissue
25
pancreatic ductal cell
25
regulatory T cell
24
smooth muscle cell
23
CD4-positive, alpha-beta memory T cell
23
EndoC_BH1
21
epithelial cell of proximal tubule
21
pericyte cell
21
tibial nerve
20
MCF-7
20
adipocyte
20
body of pancreas
20
breast cancer cell
20
glomerular endothelial cell
20
natural killer cell
20
pigmented layer of retina
20
subcutaneous adipose tissue
19
T-helper 1 cell
18
HFFc6
18
T cell
18
T-helper 17 cell
18
foreskin keratinocyte
18
pancreas
18
pancreatic beta cell
17
caudate nucleus
17
coronary artery
17
keratinocyte
17
ovary
17
pancreatic acinar cell
17
pancreatic alpha cell
17
right atrium auricular region
17
sigmoid colon
17
trophoblast cell
16
astrocyte
16
endothelial cell of hepatic sinusoid
16
induced pluripotent stem cell
15
CD8-positive, alpha-beta memory T cell
15
cardiac muscle cell
15
foreskin fibroblast
15
mesenchymal stem cell
15
omental fat pad
15
pancreatic delta cell
15
psoas muscle
15
substantia nigra
15
transverse colon
14
HepG2
14
gastrocnemius medialis
14
mononuclear cell
14
osteoblast
14
retinal pigment epithelial cell
14
testis
14
thyroid gland
14
tibial artery
13
GM12878
13
H9
13
T-helper 2 cell
13
endothelial cell of umbilical vein
13
excitatory neuron
13
fibroblast of cardiac tissue
13
frontal cortex
13
heart right ventricle
13
neutrophil
13
putamen
13
skeletal muscle tissue
13
upper lobe of left lung
12
CD4-positive, alpha-beta T cell
12
ascending aorta
12
cerebellum
12
embryonic stem cell
12
layer of hippocampus
12
lymphoblastoid cell line
12
muscle of trunk
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
12
prostate gland
11
Ammon's horn
11
chorionic villus
11
mammary epithelial cell
11
mammary gland epithelial cell
11
skeletal muscle myoblast
10
Peyer's patch
10
Rhabdomyosarcoma
10
bronchial epithelial cell
10
endocrine pancreas
10
gastric cancer cell
10
glomerular visceral epithelial cell
10
left renal cortex interstitium
10
neuronal stem cell
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
right renal pelvis
10
skeletal muscle satellite cell
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
epithelial cell of prostate
9
fibroblast of lung
9
left renal pelvis
9
liposarcoma
9
lymphocyte
9
neurosphere
9
skin fibroblast
8
22Rv1
8
B-lymphoblastoid cell line
8
aorta
8
breast epithelium
8
esophagus
8
fibroblast cell line
8
hepatic stellate cell
8
pituitary stalk
8
skeletal muscle fiber
8
trophoblast
7
CD4-positive helper T cell
7
amygdala
7
cardiomyocytes (cardiac muscle cell)
7
choroid plexus epithelial cell
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
extended pluripotent stem (EPS) cells
7
fibroblast of dermis
7
kidney tubule cell
7
lower leg skin
7
memory B cell
7
mesendoderm
7
temporal lobe
7
thoracic aorta
6
CD1c-positive myeloid dendritic cell
6
Chondroid Chordoma
6
GM12865
6
HAP-1
6
HT-29
6
HUES8
6
Jurkat
6
LNCAP
6
NAMALWA cell
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
colon epithelial cell
6
endometrium adenocarcinoma
6
erythroblast
6
eye
6
fibroblast of pulmonary artery
6
globus pallidus
6
hESC cell
6
hypothalamus
6
iPSC derived cell line
6
immortal human breast epithelial cell line cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
nucleus accumbens
6
occipital lobe
6
parathyroid adenoma
6
plasma cell
6
renal cortical epithelial cell
6
right renal cortex interstitium
6
smooth muscle cell of the coronary artery
6
tongue
6
type I muscle cell
uterus
Life stage
3
embryonic
Date released
3
February, 2021
2
September, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
3
macs
2
r
1
abc
chromhmm
1
encode-ccres
1
nospecificsoft_customcode
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
biosample_term_name!
uterus
software_used.software.name!
chromhmm
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP