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Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
1
accessible chromatin
1
candidate regulatory elements
Annotation Category
3
Target gene links
2
cis-regulatory elements
Annotation type Category
4
DNase-seq
2
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
4
in vitro differentiated cells
1
stem cell
Biosample term
128
monocyte
58
HeLa-S3
49
H1-hESC
48
heart
45
stomach
43
CD8-positive, alpha-beta T cell
40
kidney
40
neural progenitor cell
38
A549
38
brain
35
lung
34
adrenal gland
34
endothelial cell
34
muscle of arm
34
small intestine
33
islet of Langerhans
32
retina
31
liver
31
placenta
30
K562
30
macrophage
29
B cell
29
hepatocyte
29
muscle of leg
28
fibroblast
28
large intestine
27
common myeloid progenitor, CD34-positive
26
left lung
26
muscle of back
26
thymus
23
CD14-positive monocyte
23
right lung
23
smooth muscle cell
22
hematopoietic multipotent progenitor cell
22
right kidney
21
EndoC_BH1
21
adipose tissue
21
pancreatic ductal cell
21
pericyte cell
21
renal pelvis
20
pigmented layer of retina
20
regulatory T cell
20
renal cortex interstitium
19
HFFc6
19
T cell
19
heart left ventricle
18
CD4-positive, alpha-beta memory T cell
18
left kidney
18
spinal cord
18
spleen
17
T-helper 1 cell
17
coronary artery
17
pancreatic beta cell
17
tibial nerve
16
T-helper 17 cell
16
adipocyte
16
body of pancreas
16
endothelial cell of hepatic sinusoid
16
right atrium auricular region
15
caudate nucleus
15
pancreatic acinar cell
15
pancreatic delta cell
14
CD8-positive, alpha-beta memory T cell
14
astrocyte
14
excitatory neuron
14
frontal cortex
14
pancreatic alpha cell
14
subcutaneous adipose tissue
14
tibial artery
13
natural killer cell
13
pancreas
13
sigmoid colon
12
MCF-7
12
T-helper 2 cell
12
cerebellum
12
ovary
12
trophoblast cell
11
mesenchymal stem cell
11
mononuclear cell
11
neutrophil
11
omental fat pad
11
psoas muscle
11
thyroid gland
10
Ammon's horn
10
GM12878
10
HepG2
10
ascending aorta
10
fibroblast of cardiac tissue
10
pancreatic stellate cell
10
putamen
10
retinal pigment epithelial cell
10
transverse colon
9
H9
9
endothelial cell of umbilical vein
9
gastrocnemius medialis
9
heart right ventricle
9
keratinocyte
9
skeletal muscle satellite cell
9
substantia nigra
8
chorionic villus
8
colon epithelial cell
8
endocrine pancreas
8
extended pluripotent stem (EPS) cells
8
foreskin keratinocyte
8
mammary gland epithelial cell
8
muscle of trunk
8
pituitary stalk
8
progenitor cell of endocrine pancreas
8
skeletal muscle fiber
8
skeletal muscle myoblast
8
skin fibroblast
8
testis
7
Peyer's patch
7
aorta
7
cardiac muscle cell
7
chorion membrane
7
dendritic cell
7
embryonic stem cell
7
erythroblast
7
fibroblast of lung
7
glomerular endothelial cell
7
lymphoblastoid cell line
7
lymphocyte
7
memory B cell
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
osteoblast
6
CD4-positive helper T cell
6
SGBS preadipocytes
6
amygdala
6
anterior cingulate cortex
6
breast epithelium
6
cardiomyocytes (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
cortical cell of adrenal gland
6
endometrium adenocarcinoma
6
esophagus
6
fibroblast of dermis
6
immortal human breast epithelial cell line cell
6
induced pluripotent stem cell
6
kidney tubule cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
skeletal muscle tissue
6
trophoblast
6
type I muscle cell
6
upper lobe of left lung
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
HUES8
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
NAMALWA cell
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
Life stage
2
embryonic
Date released
February, 2021
2
September, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
2
r
1
abc
chromhmm
1
macs
1
nospecificsoft_customcode
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
biosample_term_name!
uterus
software_used.software.name!
chromhmm
month_released!
February, 2021
Showing 5 of 5 results
table-tab-icon
matrix-icon
Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP