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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
5
cis-regulatory elements
3
Target gene links
Annotation type Category
6
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
7
bed bed3+
1
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
primary cell
7
in vitro differentiated cells
1
stem cell
Biosample term
85
heart
83
stomach
71
brain
71
kidney
68
lung
66
muscle of arm
64
HeLa-S3
62
small intestine
61
A549
61
adrenal gland
59
placenta
56
muscle of leg
55
large intestine
54
muscle of back
53
H1-hESC
52
left lung
47
thymus
45
liver
44
right lung
42
hematopoietic multipotent progenitor cell
41
right kidney
40
K562
40
neural progenitor cell
39
renal cortex interstitium
38
islet of Langerhans
38
renal pelvis
36
left kidney
33
spinal cord
31
heart left ventricle
31
spleen
29
adipose tissue
25
MCF-7
24
body of pancreas
22
sigmoid colon
22
tibial nerve
20
breast cancer cell
20
caudate nucleus
19
HFFc6
19
ovary
19
psoas muscle
18
adipocyte
18
subcutaneous adipose tissue
18
substantia nigra
17
coronary artery
17
heart right ventricle
17
muscle of trunk
17
retina
17
thyroid gland
17
transverse colon
16
H9
16
chorionic villus
16
gastrocnemius medialis
16
induced pluripotent stem cell
16
layer of hippocampus
16
omental fat pad
16
pancreas
16
right atrium auricular region
16
skeletal muscle tissue
16
testis
15
EndoC_BH1
15
GM12878
15
HepG2
15
cerebellum
15
tibial artery
15
upper lobe of left lung
14
ascending aorta
14
endocrine pancreas
13
aorta
13
frontal cortex
13
prostate gland
13
temporal lobe
12
Peyer's patch
12
neuroblastoma cell
12
putamen
11
lymphoblastoid cell line
11
mesenchymal stem cell
10
22Rv1
10
Ammon's horn
10
gastric cancer cell
10
left cardiac atrium
10
left renal cortex interstitium
10
lymphocyte
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
9
Rhabdomyosarcoma
9
SK-N-SH
9
breast epithelium
9
cardiac muscle cell
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
esophagus
9
esophagus squamous epithelium
9
left renal pelvis
9
liposarcoma
9
parathyroid adenoma
9
right renal pelvis
9
thoracic aorta
9
trophoblast
9
vagina
8
B-lymphoblastoid cell line
8
HEK293
8
IMR-90
8
NAMALWA cell
8
cingulate gyrus
8
duodenal mucosa
8
embryonic stem cell
8
endodermal cell
8
esophagus muscularis mucosa
8
fibroblast cell line
8
immortal human breast epithelial cell line cell
8
lower leg skin
8
pituitary stalk
8
tongue
7
GM06990
7
GM12864
7
GM12865
7
GM12875
7
GM19238
7
GM19239
7
GM19240
7
HAP-1
7
HL-60
7
HT-29
7
KARPAS-422 cell
7
LNCaP clone FGC
7
MM.1S
7
SK-N-DZ
7
SK-N-MC
7
T47D
7
amygdala
7
angular gyrus
7
cardiomyocytes (cardiac muscle cell)
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
limb
7
mesendoderm
7
right lobe of liver
7
stomach smooth muscle
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
Brodmann (1909) area 46
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM08714
6
GM12891
6
GM12892
6
GM23248
6
HCT116
6
Jurkat
6
LHCN-M2
6
LoVo cell
6
MG63
6
OCI-LY7
6
PC-3
6
PC-9
6
WERI-Rb-1
6
WI38
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
chorion membrane
6
hESC cell
6
hypothalamus
6
iPSC derived cell line
6
mesodermal cell
6
mucosa of rectum
6
neuroblastoma cell line
6
neuronal stem cell
6
nucleus accumbens
6
uterus
5
A673
5
C1 segment of cervical spinal cord
5
CyT49
5
Daoy
5
Ewing sarcoma
5
GM10248
5
GM10266
5
GM18507
5
H7-hESC
5
HK-2 cell
5
HUES6
5
HUES64
5
HUES8
5
HuH-7
5
KBM-7
5
LNCAP
5
NB4
5
NT2-D1 cell
5
OCI-LY1
5
OCI-LY3
5
SJSA1
5
SW480
Life stage
4
embryonic
Date released
3
February, 2021
3
September, 2022
1
March, 2020
1
May, 2021
Software used
2
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
1
nospecificsoft_customcode
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
biosample_type!
primary cell
annotation_type!
accessible chromatin
Showing 8 of 8 results
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP