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Schema
Citing CMDGA
Clear Filters
Annotation type
1
candidate regulatory elements
1
eQTL
Annotation Category
1
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
1
ChIP-seq
1
DNase-seq
1
RNA-seq
Available data
1
bed bed3+
1
tsv
File set status
2
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
2
Homo sapiens
Biosample type
1
in vitro differentiated cells
1
tissue
Biosample term
21
stomach
18
heart
17
lung
17
muscle of arm
15
kidney
15
muscle of back
14
adrenal gland
14
common myeloid progenitor, CD34-positive
14
large intestine
14
muscle of leg
14
small intestine
13
brain
13
left lung
12
placenta
11
renal cortex interstitium
11
right lung
10
renal pelvis
10
right kidney
9
hematopoietic multipotent progenitor cell
9
left kidney
9
spleen
9
thymus
8
CD4-positive, alpha-beta T cell
7
CD8-positive, alpha-beta T cell
7
foreskin keratinocyte
7
spinal cord
6
B cell
6
H9
6
heart left ventricle
6
liver
5
CD4-positive, alpha-beta memory T cell
5
body of pancreas
5
cardiac muscle cell
5
foreskin fibroblast
5
sigmoid colon
5
subcutaneous abdominal adipose tissue
4
CD14-positive monocyte
4
MCF-7
4
Peyer's patch
4
T-cell
4
WI38
4
chorionic villus
4
dermis blood vessel endothelial cell
4
endothelial cell of umbilical vein
4
esophagus squamous epithelium
4
gastrocnemius medialis
4
gastroesophageal sphincter
4
left renal cortex interstitium
4
left renal pelvis
4
lower leg skin
4
muscle of trunk
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
neurosphere
4
omental fat pad
4
ovary
4
peripheral blood mononuclear cell
4
right renal pelvis
4
substantia nigra
4
testis
4
thyroid gland
4
tibial nerve
4
transverse colon
4
trophoblast cell
4
upper lobe of left lung
3
A549
3
MCF 10A
3
T-helper 1 cell
3
ascending aorta
3
breast epithelium
3
cardiac fibroblast
3
caudate nucleus
3
endocrine pancreas
3
esophagus muscularis mucosa
3
fibroblast of lung
3
foreskin melanocyte
3
heart right ventricle
3
layer of hippocampus
3
mammary epithelial cell
3
mesodermal cell
3
natural killer cell
3
pancreas
3
parathyroid adenoma
3
psoas muscle
3
retina
3
right renal cortex interstitium
3
skeletal muscle tissue
3
subcutaneous adipose tissue
3
suprapubic skin
3
temporal lobe
2
22Rv1
2
AG10803
2
Ammon's horn
2
HEK293
2
HeLa-S3
2
LNCAP
2
NAMALWA
2
SK-N-DZ
2
SK-N-SH
2
T-helper 17 cell
2
T-helper 2 cell
2
adipocyte
2
angular gyrus
2
aorta
2
bronchial epithelial cell
2
cardiac myoblast
2
cardiovascular progenitor cell
2
cerebellum
2
chorion
2
cingulate gyrus
2
colonic mucosa
2
coronary artery
2
dermis microvascular lymphatic vessel endothelial cell
2
duodenal mucosa
2
endodermal cell
2
epithelial cell of prostate
2
esophagus
2
eye
2
fibroblast of breast
2
lung microvascular endothelial cell
2
mesenchymal stem cell
2
middle frontal area 46
2
mucosa of rectum
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
neural cell
2
neuroepithelial stem cell
2
neuronal stem cell
2
neutrophil
2
placental basal plate
2
prostate gland
2
putamen
2
regulatory T cell
2
right atrium auricular region
2
right lobe of liver
2
skeletal muscle myoblast
2
stomach smooth muscle
2
thoracic aorta
2
tibial artery
2
tongue
2
trophoblast
2
uterus
2
vagina
1
A172
1
A673
1
ACC112
1
ACHN
1
AG04449
1
AG04450
1
AG09309
1
AG09319
1
BE2C
1
BJ
1
C1 segment of cervical spinal cord
1
C4-2B
1
CD1c-positive myeloid dendritic cell
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD8-positive, alpha-beta memory T cell
1
CMK
1
Caco-2
1
Caki2
1
D721Med
1
DND-41
1
DOHH2
1
Daoy
1
EH
1
EL
1
ELF-1
1
ELR
1
G401
1
GM04503
1
GM04504
1
GM06990
1
GM08714
1
GM10248
1
GM10266
1
GM12801
1
GM12864
1
GM12865
1
GM12873
1
GM12874
1
GM12875
1
GM12878
1
GM13976
1
GM13977
1
GM20000
1
GM23248
1
GM23338
1
H1
1
H4
1
H54
1
H7
1
HAP-1
1
HCEC 1CT
1
HCT116
1
HFF-Myc
1
HK-2
1
HL-60
1
HS-27A
1
HS-5
Organ
1
brain
Life stage
1
adult
1
embryonic
Date released
1
February, 2020
1
February, 2021
Software used
4
macs
3
r
1
abc
1
chromhmm
1
encode-ccres
1
gtex_eqtl:V8
1
gtex_finemapping_eQTL:caveman
1
gtex_finemapping_eQTL:caviar
1
gtex_finemapping_eQTL:dapg
1
nospecificsoft_customcode
1
qTLtools
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
Showing 2 of 2 results
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Download
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR303ZTJ
released
Annotation file set
: eQTL of amygdala for GTEx V8
Lab:
AMP-T2D consortium
Project:
AMP