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Schema
Citing CMDGA
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Annotation type
2
gene expression
1
binding sites
1
target gene predictions
Annotation Category
2
Gene expression levels
1
Target gene links
1
cis-regulatory elements
Annotation type Category
2
RNA-seq
1
ChIP-seq
1
pCHi-C
Available data
2
bed bed3+
2
tsv
File set status
4
released
Genome assembly (visualization)
2
hg19
Organism
4
Homo sapiens
Biosample type
3
tissue
1
stem cell
Biosample term
4
Ammon's horn
4
cardiomyocytes (cardiac muscle cell)
4
hepatocyte
3
C1 segment of cervical spinal cord
3
amygdala
3
anterior cingulate cortex
3
ascending aorta
3
body of pancreas
3
caudate nucleus
3
cerebellum
3
cerebellum (Hemisphere)
3
coronary artery
3
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
3
frontal cortex
3
gastrocnemius medialis(Muscle - Skeletal)
3
hypothalamus
3
islet of Langerhans
3
left ventricle myocardium
3
nucleus accumbens
3
omental fat pad
3
psoas muscle
3
putamen
3
right atrium auricular region
3
right lobe of liver
3
subcutaneous adipose tissue
3
substantia nigra
3
tibial artery
3
tibial nerve
2
aorta
2
cardiac precursors (cardiac muscle cell)
2
heart left ventricle
2
heart right ventricle
2
liver
2
pancreas
1
B-lymphoblastoid cell line
1
EndoC_BH1
1
HepG2
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
adipose tissue
1
adrenal gland
1
bladder (urinary bladder)
1
dorsolateral prefrontal cortex
1
embryonic stem cell
1
endothelial cell of umbilical vein
1
esophagus
1
fibroblast cell line
1
gastric (mucosa of stomach)
1
heart
1
lung
1
lymphocyte of B lineage (iPSC)
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell
1
ovary
1
right cardiac atrium
1
sigmoid colon
1
small intestine
1
spleen
1
thymus
1
trophoblast
1
white adipose cell
Disease term
1
type 2 diabetes mellitus
Organ
3
pancreas
Life stage
2
adult
Date released
52
September, 2022
29
February, 2021
8
August, 2021
6
March, 2023
5
January, 2022
4
March, 2020
4
May, 2020
4
May, 2021
3
January, 2020
3
June, 2020
2
August, 2017
2
November, 2019
1
April, 2019
1
February, 2020
1
February, 2024
1
January, 2018
1
November, 2021
Software used
2
r
1
nospecificsoft_customcode
1
spp
Lab
3
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
4
AMP
RFA
4
AMP
Showing 4 of 4 results
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Download
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR388BHU
released
Annotation file set
: Gene expression levels of pancreatic islets (islet of Langerhans) for normal individuals from RNA-seq (SRP117935)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR839IGA
released
Annotation file set
: Gene expression levels of pancreatic islets (islet of Langerhans) for T2D individuals from RNA-seq (SRP117935)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR883333
released
Annotation file set
: Islet TF binding sites (PDX, MAFB, NKX2.2, NKX6.1, FOXA2)
Lab:
Kyle Gaulton, UCSD
Project:
AMP