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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
1
accessible chromatin
1
binding sites
1
candidate regulatory elements
1
chromatin state
1
histone modifications
Annotation Category
5
cis-regulatory elements
3
Target gene links
Annotation type Category
5
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
7
bed bed3+
1
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
primary cell
7
in vitro differentiated cells
1
stem cell
Biosample term
72
heart
66
kidney
65
stomach
62
HeLa-S3
60
brain
59
A549
54
H1-hESC
51
lung
50
muscle of arm
49
neural progenitor cell
49
small intestine
48
adrenal gland
48
placenta
44
islet of Langerhans
44
muscle of leg
43
liver
42
large intestine
40
K562
39
left lung
39
muscle of back
39
thymus
37
retina
34
hematopoietic multipotent progenitor cell
34
right lung
32
right kidney
30
adipose tissue
30
renal pelvis
29
renal cortex interstitium
28
heart left ventricle
28
spinal cord
27
left kidney
25
spleen
23
EndoC_BH1
22
MCF-7
22
tibial nerve
20
adipocyte
20
body of pancreas
20
breast cancer cell
20
caudate nucleus
20
pigmented layer of retina
19
HFFc6
19
coronary artery
19
pancreas
19
subcutaneous adipose tissue
18
right atrium auricular region
17
embryonic stem cell
17
psoas muscle
17
sigmoid colon
17
tibial artery
16
HepG2
16
heart right ventricle
16
induced pluripotent stem cell
16
ovary
15
GM12878
15
frontal cortex
15
substantia nigra
15
thyroid gland
14
ascending aorta
13
cerebellum
13
gastrocnemius medialis
13
omental fat pad
13
testis
13
transverse colon
12
endocrine pancreas
12
layer of hippocampus
12
lymphoblastoid cell line
12
muscle of trunk
12
neuroblastoma cell
12
putamen
12
skeletal muscle tissue
11
Ammon's horn
11
aorta
11
chorionic villus
11
prostate gland
10
H9
10
Peyer's patch
10
Rhabdomyosarcoma
10
gastric cancer cell
10
left cardiac atrium
10
lymphocyte
10
mesenchymal stem cell
10
progenitor cell of endocrine pancreas
10
upper lobe of left lung
9
NAMALWA cell
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
liposarcoma
9
temporal lobe
9
trophoblast
8
22Rv1
8
B-lymphoblastoid cell line
8
GM19240
8
IMR-90
8
KARPAS-422 cell
8
fibroblast cell line
8
immortal human breast epithelial cell line cell
8
pituitary stalk
8
thoracic aorta
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BE(2)-C
7
BJ cell
7
Caco-2 cell
7
GM06990
7
GM12864
7
GM12865
7
GM19238
7
GM19239
7
HAP-1
7
HEK293
7
HL-60
7
HT-29
7
Jurkat
7
LoVo cell
7
MM.1S
7
OCI-LY7
7
SK-N-DZ
7
SK-N-SH
7
WERI-Rb-1
7
amygdala
7
breast epithelium
7
cardiac muscle cell
7
cardiomyocytes (cardiac muscle cell)
7
chorion membrane
7
cingulate gyrus
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
esophagus
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
extended pluripotent stem (EPS) cells
7
limb
7
mesendoderm
6
Brodmann (1909) area 46
6
CMK
6
Chondroid Chordoma
6
GM12875
6
GM12891
6
GM12892
6
GM18507
6
GM23248
6
H7-hESC
6
HUES8
6
HuH-7
6
LHCN-M2
6
LNCaP clone FGC
6
MG63
6
NT2-D1 cell
6
PC-9
6
SK-N-MC
6
T47D
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
colonic mucosa
6
endodermal cell
6
globus pallidus
6
hESC cell
6
hypothalamus
6
iPSC derived cell line
6
left renal cortex interstitium
6
left renal pelvis
6
midbrain
6
mucosa of rectum
6
neuroblastoma cell line
6
nucleus accumbens
6
occipital lobe
6
pancreatic ductal cell
6
right lobe of liver
6
right renal pelvis
6
superior temporal gyrus
6
tongue
5
C1 segment of cervical spinal cord
5
CyT49
5
Daoy
5
Ewing sarcoma
5
GM08714
5
GM10248
5
GM10266
5
HCT-116 cell
5
HCT116
5
HK-2 cell
5
HUES6
5
KBM-7
5
OCI-LY1
5
PC-3
5
RWPE1
5
Rh-4 cell
5
SGBS preadipocytes
5
SJSA1
5
SW480
5
angular gyrus
5
duodenal mucosa
5
lower leg skin
5
osteosarcoma
5
prostate cancer cell line
5
right cardiac atrium
Life stage
3
embryonic
Date released
3
September, 2022
2
February, 2021
1
June, 2020
1
March, 2020
1
May, 2021
Software used
3
macs
2
r
1
abc
1
chromhmm
encode-ccres
1
nospecificsoft_customcode
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
biosample_type!
primary cell
software_used.software.name!
encode-ccres
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP