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Schema
Citing CMDGA
Clear Filters
Annotation type
3
chromatin state
3
target gene predictions
1
accessible chromatin
1
candidate regulatory elements
Annotation Category
5
cis-regulatory elements
3
Target gene links
Annotation type Category
5
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
5
bed bed3+
2
bed bed9+
1
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
5
in vitro differentiated cells
2
primary cell
1
stem cell
Biosample term
65
heart
56
brain
53
HeLa-S3
52
H1-hESC
50
muscle of arm
49
kidney
48
stomach
47
lung
45
placenta
44
muscle of leg
44
neural progenitor cell
43
small intestine
41
large intestine
39
left lung
39
muscle of back
37
thymus
34
right lung
32
right kidney
31
CD8-positive, alpha-beta T cell
30
renal pelvis
29
adrenal gland
29
renal cortex interstitium
28
endothelial cell
27
fibroblast
27
left kidney
27
macrophage
26
monocyte
26
spinal cord
23
smooth muscle cell
22
pericyte cell
21
EndoC_BH1
20
K562
20
islet of Langerhans
19
HFFc6
19
adipocyte
19
liver
19
pancreatic ductal cell
18
B cell
18
CD14-positive monocyte
18
CD4-positive, alpha-beta memory T cell
18
trophoblast cell
16
hepatocyte
15
T-helper 17 cell
15
astrocyte
15
endothelial cell of umbilical vein
15
heart left ventricle
15
pancreatic acinar cell
14
excitatory neuron
13
HepG2
13
T cell
13
embryonic stem cell
13
foreskin keratinocyte
13
keratinocyte
13
muscle of trunk
13
pancreatic beta cell
13
retinal pigment epithelial cell
12
chorionic villus
12
heart right ventricle
12
pancreatic alpha cell
12
pancreatic delta cell
12
regulatory T cell
12
retina
11
erythroblast
11
fibroblast of cardiac tissue
11
left cardiac atrium
11
mesenchymal stem cell
10
H9
10
T-helper 1 cell
10
chorion membrane
10
common myeloid progenitor, CD34-positive
10
fibroblast of lung
10
foreskin fibroblast
10
osteoblast
10
pituitary stalk
10
skin fibroblast
10
spleen
9
GM12878
9
T-helper 2 cell
9
cardiac muscle cell
9
colon epithelial cell
9
extended pluripotent stem (EPS) cells
9
lymphocyte
9
memory B cell
9
naive thymus-derived CD8-positive, alpha-beta T cell
9
neurosphere
9
pancreatic stellate cell
9
progenitor cell of endocrine pancreas
9
skeletal muscle myoblast
8
SK-N-SH
8
epithelial cell of prostate
8
fibroblast of dermis
8
induced pluripotent stem cell
8
left renal cortex interstitium
8
left renal pelvis
8
neutrophil
8
skeletal muscle fiber
8
trophoblast
7
NAMALWA cell
7
SK-N-DZ
7
adipose tissue
7
bronchial epithelial cell
7
choroid plexus epithelial cell
7
coronary artery
7
eye
7
glomerular endothelial cell
7
limb
7
lymphoblastoid cell line
7
mammary gland epithelial cell
7
natural killer cell
7
ovary
7
psoas muscle
7
right renal cortex interstitium
7
right renal pelvis
7
skeletal muscle satellite cell
7
type I muscle cell
6
22Rv1
6
CD4-positive helper T cell
6
CD8-positive, alpha-beta memory T cell
6
IMR-90
6
SGBS preadipocytes
6
cortical cell of adrenal gland
6
dendritic cell
6
dermis lymphatic vessel endothelial cell
6
endodermal cell
6
enterocyte
6
epithelial cell of proximal tubule
6
glomerular visceral epithelial cell
6
iPSC derived cell line
6
kidney epithelial cell
6
mesendoderm
6
naive B cell
6
olfactory receptor cell
6
pancreas
6
tongue
6
type II muscle cell
5
AG04449 cell
5
AG04450 cell
5
BE(2)-C
5
BJ cell
5
GM06990
5
GM12864
5
GM12865
5
GM18507
5
H7-hESC
5
HEK293
5
HUES8
5
NT2-D1 cell
5
PC-9
5
SK-N-MC
5
T follicular helper cell
5
WERI-Rb-1
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
basal cell
5
central memory CD8-positive, alpha-beta T cell
5
chondrocyte
5
effector memory CD8-positive, alpha-beta T cell
5
epithelial cell of esophagus
5
fibroblast of mammary gland
5
fibroblast of pulmonary artery
5
fibroblast of villous mesenchyme
5
hematopoietic multipotent progenitor cell
5
inhibitory neuron
5
kidney capillary endothelial cell
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
neural cell
5
renal cortical epithelial cell
5
sigmoid colon
5
skeletal muscle cell
5
skeletal muscle tissue
5
skin of body
4
A673
4
CD1c-positive myeloid dendritic cell
4
CD4-positive, alpha-beta T cell
4
CMK
4
CyT49
4
Daoy
4
GM03348
4
GM08714
4
GM12891
4
GM12892
4
HUES6
4
L1-S8
4
L1-S8R
4
MG63
4
Panc1
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
SJCRH30
4
activated CD4-positive, alpha-beta T cell
4
blood vessel smooth muscle cell
4
brain microvascular endothelial cell
4
cardiomyocytes (cardiac muscle cell)
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
embryonic facial prominence
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
fibroblast of peridontal ligament
4
fibroblast of the aortic adventitia
4
fibroblast of the conjunctiva
Life stage
adult
3
embryonic
2
child
Date released
February, 2021
3
September, 2022
2
May, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
3
chromhmm
2
r
1
abc
1
macs
1
nospecificsoft_customcode
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
relevant_life_stage!
adult
month_released!
February, 2021
Showing 8 of 8 results
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR825RTA
released
Annotation file set
: Chromatin state of mature neutrophil from BLUEPRINT ChromHmm Segmentation of ChIP-Seq data
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832QLR
released
Annotation file set
: Chromatin state of mature neutrophil from BLUEPRINT ChromHmm Segmentation of ChIP-Seq data
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP