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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
1
histone modifications
Annotation Category
6
cis-regulatory elements
2
Target gene links
Annotation type Category
5
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
8
hg19
Organism
8
Homo sapiens
Biosample type
5
in vitro differentiated cells
2
primary cell
1
stem cell
Biosample term
116
monocyte
54
HeLa-S3
47
CD8-positive, alpha-beta T cell
41
H1-hESC
32
neural progenitor cell
31
endothelial cell
31
fibroblast
30
kidney
30
macrophage
30
retina
29
islet of Langerhans
28
heart
28
stomach
23
hepatocyte
23
liver
22
brain
21
K562
20
breast cancer cell
20
pigmented layer of retina
20
smooth muscle cell
19
CD14-positive monocyte
19
HFFc6
19
adrenal gland
19
lung
19
muscle of arm
19
pericyte cell
18
B cell
18
placenta
18
small intestine
16
endothelial cell of hepatic sinusoid
16
large intestine
16
muscle of leg
15
EndoC_BH1
15
common myeloid progenitor, CD34-positive
15
heart left ventricle
15
muscle of back
15
pancreatic ductal cell
15
spleen
14
subcutaneous adipose tissue
14
thymus
13
H9
13
adipocyte
13
cardiac muscle cell
13
keratinocyte
13
left lung
13
pancreas
13
renal cortex interstitium
13
renal pelvis
12
CD4-positive, alpha-beta T cell
12
HepG2
12
astrocyte
12
coronary artery
12
excitatory neuron
12
hematopoietic multipotent progenitor cell
12
lymphoblastoid cell line
12
neuroblastoma cell
12
pancreatic beta cell
12
retinal pigment epithelial cell
12
right lung
12
spinal cord
11
GM12878
11
T cell
11
embryonic stem cell
11
mammary epithelial cell
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
pancreatic acinar cell
11
putamen
11
tibial nerve
10
MCF-7
10
Rhabdomyosarcoma
10
adipose tissue
10
endothelial cell of umbilical vein
10
foreskin fibroblast
10
gastric cancer cell
10
natural killer cell
10
neuronal stem cell
10
pancreatic alpha cell
10
regulatory T cell
10
right atrium auricular region
10
right kidney
9
caudate nucleus
9
diffuse intrinsic pontine glioma
9
liposarcoma
9
mesenchymal stem cell
9
pancreatic delta cell
9
substantia nigra
9
tibial artery
8
Ammon's horn
8
B-lymphoblastoid cell line
8
body of pancreas
8
fibroblast cell line
8
foreskin keratinocyte
8
neutrophil
8
omental fat pad
8
osteoblast
8
pituitary stalk
7
A549
7
CD4-positive helper T cell
7
Jurkat
7
esophageal adenocarcinoma
7
frontal cortex
7
ovary
7
skeletal muscle satellite cell
7
testis
6
Chondroid Chordoma
6
HUES8
6
LNCAP
6
SGBS preadipocytes
6
T-helper 1 cell
6
bronchial epithelial cell
6
chondrocyte
6
erythroblast
6
fibroblast of cardiac tissue
6
hESC cell
6
iPSC derived cell line
6
induced pluripotent stem cell
6
left kidney
6
lymphocyte
6
mammary gland epithelial cell
6
neuroblastoma cell line
6
sigmoid colon
6
skeletal muscle myoblast
6
trophoblast cell
6
upper lobe of left lung
5
cardiac fibroblast
5
CD4-positive, alpha-beta memory T cell
5
CyT49
5
Ewing sarcoma
5
HAP-1
5
HEK293
5
HT-29
5
IMR-90
5
OCI-LY7
5
PC-9
5
Peyer's patch
5
Rh-4 cell
5
acute myeloid leukemia
5
amygdala
5
ascending aorta
5
cerebellum
5
enterocyte
5
glutamatergic neuron
5
hepatic stellate cell
5
mesendoderm
5
osteosarcoma
5
prostate cancer cell line
5
prostate gland
5
right lobe of liver
5
skeletal muscle fiber
5
skin fibroblast
5
smooth muscle cell of the coronary artery
5
transverse colon
5
type I muscle cell
4
22Rv1
4
B-lymphocyte
4
C1 segment of cervical spinal cord
4
CD1c-positive myeloid dendritic cell
4
CMK
4
COLO205
4
GM06990
4
GM12864
4
GM12865
4
GM19240
4
GM23248
4
HCT-116 cell
4
HL-60
4
HS-SY-2 cell
4
Ishikawa
4
KARPAS-422 cell
4
LHCN-M2
4
LoVo cell
4
MDA-MB-231 cell
4
MG63
4
MM.1S
4
Mantle cell lymphoma
4
NCCIT cell
4
PC-3
4
RPMI8226
4
SW480
4
T-cell
4
T-cell acute lymphoblastic leukemia
4
acute myeloid leukemia cell
4
anterior cingulate cortex
4
aortic endothelial cell
4
cartilage tissue
4
choroid plexus epithelial cell
4
colon epithelial cell
4
cortical cell of adrenal gland
4
diffuse large B-cell lymphoma
4
erythroid cell
4
esophageal squamous cell carcinoma
4
esophagus squamous epithelium
4
foreskin melanocyte
4
gastrocnemius medialis
4
heart right ventricle
4
hypothalamus
4
left renal cortex interstitium
4
left renal pelvis
4
mast cell
4
memory B cell
Life stage
1
embryonic
1
unknown
Date released
5
February, 2021
1
June, 2020
1
March, 2020
1
May, 2021
Software used
r
chromhmm
4
macs
2
encode-ccres
1
abc
1
nospecificsoft_customcode
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
software_used.software.name!
chromhmm
r
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR960SRS
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mononuclear cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR323OLK
released
Annotation file set
: Binding sites annotation for Blood Cord_blood_mononuclear from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP