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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
1
accessible chromatin
1
binding sites
1
candidate regulatory elements
1
histone modifications
Annotation Category
4
cis-regulatory elements
3
Target gene links
Annotation type Category
4
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
7
bed bed3+
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
6
in vitro differentiated cells
1
stem cell
Biosample term
131
monocyte
59
HeLa-S3
53
H1-hESC
51
heart
50
kidney
46
neural progenitor cell
46
stomach
45
islet of Langerhans
44
CD8-positive, alpha-beta T cell
42
brain
41
A549
41
endothelial cell
36
liver
35
lung
34
K562
34
adrenal gland
34
hepatocyte
34
muscle of arm
34
placenta
34
retina
34
small intestine
32
fibroblast
32
macrophage
30
B cell
29
large intestine
29
muscle of leg
28
thymus
27
common myeloid progenitor, CD34-positive
26
left lung
26
muscle of back
25
pancreatic ductal cell
24
adipose tissue
24
hematopoietic multipotent progenitor cell
23
CD14-positive monocyte
23
EndoC_BH1
23
adipocyte
23
right lung
23
smooth muscle cell
22
regulatory T cell
22
right kidney
21
epithelial cell of proximal tubule
21
pericyte cell
21
renal pelvis
21
spinal cord
20
breast cancer cell
20
heart left ventricle
20
pigmented layer of retina
20
renal cortex interstitium
19
glomerular endothelial cell
19
spleen
19
subcutaneous adipose tissue
18
CD4-positive, alpha-beta memory T cell
18
HFFc6
18
T cell
18
keratinocyte
18
left kidney
18
pancreatic beta cell
17
MCF-7
17
caudate nucleus
17
natural killer cell
17
pancreatic acinar cell
17
pancreatic alpha cell
17
tibial nerve
16
T-helper 1 cell
16
body of pancreas
16
coronary artery
16
endothelial cell of hepatic sinusoid
16
induced pluripotent stem cell
16
pancreas
16
right atrium auricular region
15
T-helper 17 cell
15
astrocyte
15
osteoblast
15
pancreatic delta cell
14
CD8-positive, alpha-beta memory T cell
14
GM12878
14
HepG2
14
retinal pigment epithelial cell
14
tibial artery
13
excitatory neuron
13
fibroblast of cardiac tissue
13
frontal cortex
13
mesenchymal stem cell
13
mononuclear cell
13
sigmoid colon
13
trophoblast cell
12
T-helper 2 cell
12
cerebellum
12
embryonic stem cell
12
lymphoblastoid cell line
12
neuroblastoma cell
12
ovary
12
substantia nigra
11
ascending aorta
11
endothelial cell of umbilical vein
11
erythroblast
11
foreskin fibroblast
11
mammary gland epithelial cell
11
neutrophil
11
omental fat pad
11
psoas muscle
11
putamen
11
skeletal muscle myoblast
11
thyroid gland
10
Ammon's horn
10
Rhabdomyosarcoma
10
cardiac muscle cell
10
gastric cancer cell
10
glomerular visceral epithelial cell
10
layer of hippocampus
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
testis
10
transverse colon
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
foreskin keratinocyte
9
gastrocnemius medialis
9
heart right ventricle
9
liposarcoma
9
lymphocyte
9
prostate gland
9
skeletal muscle satellite cell
9
skin fibroblast
8
B-lymphoblastoid cell line
8
H9
8
bronchial epithelial cell
8
fibroblast cell line
8
fibroblast of dermis
8
fibroblast of lung
8
hepatic stellate cell
8
left cardiac atrium
8
mammary epithelial cell
8
muscle of trunk
8
pituitary stalk
8
skeletal muscle fiber
8
skeletal muscle tissue
7
CD4-positive helper T cell
7
CD4-positive, alpha-beta T cell
7
amygdala
7
cardiomyocytes (cardiac muscle cell)
7
endocrine pancreas
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
mature neutrophil
7
memory B cell
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
neuronal stem cell
7
trophoblast
7
upper lobe of left lung
6
22Rv1
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
Caco-2 cell
6
Chondroid Chordoma
6
GM12865
6
HUES8
6
Jurkat
6
NAMALWA cell
6
Peyer's patch
6
anterior cingulate cortex
6
aorta
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
choroid plexus epithelial cell
6
colon epithelial cell
6
endometrium adenocarcinoma
6
globus pallidus
6
hESC cell
6
hypothalamus
6
iPSC derived cell line
6
immortal human breast epithelial cell line cell
6
kidney tubule cell
6
mesendoderm
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
nucleus accumbens
6
occipital lobe
6
plasma cell
6
smooth muscle cell of the coronary artery
6
type I muscle cell
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD1c-positive myeloid dendritic cell
5
CMK
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
Life stage
2
embryonic
Date released
2
February, 2021
2
September, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
3
macs
2
r
1
abc
encode-ccres
1
nospecificsoft_customcode
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
files.file_type!
bed bed9
software_used.software.name!
encode-ccres
Showing 7 of 7 results
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP