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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
Annotation Category
3
Target gene links
2
cis-regulatory elements
Annotation type Category
4
DNase-seq
3
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
5
bed bed3+
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
4
in vitro differentiated cells
1
stem cell
Biosample term
63
stomach
62
heart
61
HeLa-S3
52
kidney
52
lung
50
H1-hESC
50
muscle of arm
49
brain
47
adrenal gland
47
small intestine
42
placenta
41
A549
41
common myeloid progenitor, CD34-positive
41
large intestine
41
muscle of back
41
muscle of leg
39
left lung
38
islet of Langerhans
35
liver
34
thymus
33
right lung
32
K562
32
right kidney
30
hematopoietic multipotent progenitor cell
30
renal cortex interstitium
29
B cell
29
renal pelvis
27
CD14-positive monocyte
27
left kidney
26
monocyte
24
spleen
23
CD4-positive, alpha-beta memory T cell
23
adipose tissue
23
spinal cord
22
endothelial cell
22
hepatocyte
21
epithelial cell of proximal tubule
21
heart left ventricle
20
body of pancreas
20
regulatory T cell
19
HFFc6
19
T-helper 1 cell
18
CD8-positive, alpha-beta T cell
18
T-helper 17 cell
18
glomerular endothelial cell
18
subcutaneous adipose tissue
18
tibial nerve
17
adipocyte
17
macrophage
16
MCF-7
16
caudate nucleus
16
induced pluripotent stem cell
16
neural progenitor cell
16
ovary
16
sigmoid colon
15
CD8-positive, alpha-beta memory T cell
15
H9
15
coronary artery
15
foreskin keratinocyte
15
natural killer cell
15
substantia nigra
15
trophoblast cell
14
CD4-positive, alpha-beta T cell
14
T-helper 2 cell
14
endothelial cell of umbilical vein
14
omental fat pad
14
psoas muscle
14
right atrium auricular region
14
smooth muscle cell
14
transverse colon
13
EndoC_BH1
13
T cell
13
heart right ventricle
13
mononuclear cell
13
thyroid gland
12
GM12878
12
ascending aorta
12
cerebellum
12
chorionic villus
12
fibroblast
12
fibroblast of lung
12
gastrocnemius medialis
12
muscle of trunk
12
pancreatic ductal cell
12
skeletal muscle tissue
11
cardiac muscle cell
11
cardiomyocytes
11
foreskin fibroblast
11
frontal cortex
11
neutrophil
11
pancreas
11
retina
11
skeletal muscle myoblast
11
testis
11
tibial artery
10
Peyer's patch
10
endocrine pancreas
10
left renal cortex interstitium
10
mesenchymal stem cell
10
pericyte cell
10
putamen
9
Ammon's horn
9
aorta
9
fibroblast of dermis
9
layer of hippocampus
9
naive thymus-derived CD4-positive, alpha-beta T cell
9
neurosphere
9
pancreatic beta cell
9
pancreatic delta cell
8
HepG2
8
SK-N-SH
8
breast epithelium
8
cardiomyocytes (cardiac muscle cell)
8
dermis blood vessel endothelial cell
8
esophagus
8
extended pluripotent stem (EPS) cells
8
left cardiac atrium
8
pancreatic acinar cell
8
pituitary stalk
8
progenitor cell of endocrine pancreas
8
right renal pelvis
8
upper lobe of left lung
7
astrocyte
7
cingulate gyrus
7
colonic mucosa
7
fibroblast of cardiac tissue
7
keratinocyte
7
left renal pelvis
7
lower leg skin
7
lymphocyte
7
mammary gland epithelial cell
7
pancreatic alpha cell
7
temporal lobe
6
22Rv1
6
SK-N-DZ
6
T-cell
6
WI38
6
alternatively activated macrophage
6
amygdala
6
angular gyrus
6
anterior cingulate cortex
6
bronchial epithelial cell
6
cardiac precursors (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
chorion membrane
6
dendritic cell
6
duodenal mucosa
6
endodermal cell
6
endometrium adenocarcinoma
6
esophagus muscularis mucosa
6
esophagus squamous epithelium
6
eye
6
fibroblast of breast
6
glomerular visceral epithelial cell
6
immortal human breast epithelial cell line cell
6
lymphoblastoid cell line
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
parathyroid adenoma
6
right renal cortex interstitium
6
thoracic aorta
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
HCT116
5
HEK293
5
IMR-90
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
LNCaP clone FGC
5
Lymphatic Endothelial Cell
5
M2 Macrophage
Life stage
3
embryonic
Date released
2
September, 2022
1
February, 2021
1
March, 2020
1
May, 2021
Software used
macs
2
r
1
abc
1
encode-ccres
1
nospecificsoft_customcode
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
files.file_type!
bed bed9
software_used.software.name!
macs
Showing 5 of 5 results
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP