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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
Annotation Category
3
cis-regulatory elements
2
Target gene links
Annotation type Category
3
ChIP-seq
3
DNase-seq
1
pCHi-C
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
4
in vitro differentiated cells
1
stem cell
Biosample term
127
monocyte
69
heart
62
stomach
61
HeLa-S3
56
A549
56
brain
56
kidney
51
H1-hESC
51
lung
50
muscle of arm
48
small intestine
46
adrenal gland
44
neural progenitor cell
44
placenta
43
muscle of leg
42
CD8-positive, alpha-beta T cell
40
large intestine
39
common myeloid progenitor, CD34-positive
39
left lung
39
liver
39
muscle of back
37
K562
36
B cell
36
islet of Langerhans
36
thymus
35
retina
34
endothelial cell
34
right lung
32
hematopoietic multipotent progenitor cell
32
right kidney
30
hepatocyte
30
renal pelvis
29
fibroblast
29
macrophage
29
renal cortex interstitium
27
CD4-positive, alpha-beta memory T cell
27
heart left ventricle
27
left kidney
26
adipose tissue
25
spinal cord
24
regulatory T cell
24
smooth muscle cell
23
T cell
22
pericyte cell
22
spleen
22
tibial nerve
21
CD8-positive, alpha-beta memory T cell
21
EndoC_BH1
20
T-helper 1 cell
20
pancreatic ductal cell
20
pigmented layer of retina
19
HFFc6
19
T-helper 17 cell
19
body of pancreas
18
adipocyte
18
caudate nucleus
18
coronary artery
18
right atrium auricular region
17
MCF-7
17
mononuclear cell
17
pancreatic beta cell
17
tibial artery
16
endothelial cell of hepatic sinusoid
16
heart right ventricle
16
pancreas
16
psoas muscle
16
sigmoid colon
15
T-helper 2 cell
15
frontal cortex
15
natural killer cell
15
ovary
15
pancreatic delta cell
15
subcutaneous adipose tissue
15
trophoblast cell
14
astrocyte
14
mesenchymal stem cell
14
pancreatic acinar cell
14
pancreatic alpha cell
14
thyroid gland
13
ascending aorta
13
endothelial cell of umbilical vein
13
excitatory neuron
13
fibroblast of cardiac tissue
13
neutrophil
13
omental fat pad
13
substantia nigra
12
CD14-positive monocyte
12
GM12878
12
HepG2
12
embryonic stem cell
12
endocrine pancreas
12
fibroblast of lung
12
foreskin keratinocyte
12
gastrocnemius medialis
12
mammary gland epithelial cell
12
retinal pigment epithelial cell
12
skeletal muscle satellite cell
12
transverse colon
11
Ammon's horn
11
aorta
11
cerebellum
11
chorionic villus
11
muscle of trunk
11
putamen
11
testis
10
Peyer's patch
10
fibroblast of dermis
10
keratinocyte
10
left cardiac atrium
10
pancreatic stellate cell
10
skeletal muscle myoblast
10
skeletal muscle tissue
9
H9
9
erythroblast
9
kidney tubule cell
9
layer of hippocampus
9
skin fibroblast
9
upper lobe of left lung
8
colon epithelial cell
8
foreskin fibroblast
8
immortal human breast epithelial cell line cell
8
lymphocyte
8
naive T cell
8
progenitor cell of endocrine pancreas
8
skeletal muscle fiber
8
temporal lobe
8
thoracic aorta
8
trophoblast
7
CD4-positive, alpha-beta T cell
7
NAMALWA cell
7
SK-N-DZ
7
SK-N-SH
7
chorion membrane
7
cingulate gyrus
7
endometrium adenocarcinoma
7
esophagus
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
extended pluripotent stem (EPS) cells
7
glomerular endothelial cell
hepatic stellate cell
7
limb
7
lymphoblastoid cell line
7
memory B cell
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
osteoblast
6
22Rv1
6
Brodmann (1909) area 46
6
GM19240
6
LNCaP clone FGC
6
SGBS preadipocytes
6
T47D
6
amygdala
6
angular gyrus
6
anterior cingulate cortex
6
breast epithelium
6
cardiac muscle cell
6
colonic mucosa
6
glomerular visceral epithelial cell
6
induced pluripotent stem cell
6
kidney glomerular epithelial cell
6
left renal cortex interstitium
6
left renal pelvis
6
mucosa of rectum
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neurosphere
6
right lobe of liver
6
right renal pelvis
6
tongue
6
type I muscle cell
5
cardiac fibroblast
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
BE(2)-C
5
BJ cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
Caco-2 cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
Life stage
3
embryonic
Date released
February, 2021
3
September, 2022
1
June, 2020
1
March, 2020
Software used
2
r
1
chromhmm
1
macs
1
nospecificsoft_customcode
Lab
5
AMP-T2D consortium
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
lab.title!
Jesse Engreitz, Stanford University
biosample_term_name!
hepatic stellate cell
month_released!
February, 2021
Showing 5 of 5 results
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP