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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
target gene predictions
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
Annotation Category
3
cis-regulatory elements
Annotation type Category
2
ChIP-seq
2
DNase-seq
Available data
2
bed bed3+
1
bed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
in vitro differentiated cells
Biosample term
125
monocyte
49
heart
43
stomach
42
kidney
40
brain
39
CD8-positive, alpha-beta T cell
39
neural progenitor cell
38
A549
35
islet of Langerhans
34
lung
34
muscle of arm
32
retina
32
small intestine
31
adrenal gland
30
liver
30
muscle of leg
30
placenta
27
B cell
27
endothelial cell
27
hepatocyte
27
large intestine
26
common myeloid progenitor, CD34-positive
26
left lung
26
macrophage
26
muscle of back
25
fibroblast
23
right lung
22
right kidney
21
hematopoietic multipotent progenitor cell
21
renal pelvis
21
thymus
20
EndoC_BH1
20
heart left ventricle
20
pigmented layer of retina
20
regulatory T cell
20
renal cortex interstitium
19
T cell
19
adipose tissue
19
tibial nerve
18
CD4-positive, alpha-beta memory T cell
18
pancreatic ductal cell
18
spinal cord
17
T-helper 1 cell
17
coronary artery
17
left kidney
16
T-helper 17 cell
16
adipocyte
16
caudate nucleus
16
endothelial cell of hepatic sinusoid
16
right atrium auricular region
16
smooth muscle cell
15
K562
15
body of pancreas
15
pancreatic beta cell
15
spleen
15
subcutaneous adipose tissue
15
tibial artery
14
CD8-positive, alpha-beta memory T cell
14
excitatory neuron
14
frontal cortex
13
H1-hESC
12
MCF-7
12
T-helper 2 cell
12
cerebellum
12
embryonic stem cell
12
pancreatic acinar cell
12
pancreatic alpha cell
12
pericyte cell
12
substantia nigra
11
ascending aorta
11
astrocyte
11
endothelial cell of umbilical vein
11
natural killer cell
11
omental fat pad
11
pancreas
11
retinal pigment epithelial cell
10
HepG2
10
heart right ventricle
10
mononuclear cell
10
ovary
10
pancreatic delta cell
10
putamen
10
sigmoid colon
10
skeletal muscle satellite cell
10
thyroid gland
10
trophoblast cell
9
Ammon's horn
9
erythroblast
9
extended pluripotent stem (EPS) cells
9
fibroblast of cardiac tissue
9
foreskin keratinocyte
9
left cardiac atrium
9
neutrophil
9
skeletal muscle myoblast
9
transverse colon
8
CD14-positive monocyte
8
chorionic villus
8
endocrine pancreas
8
fibroblast of lung
8
gastrocnemius medialis
8
mammary gland epithelial cell
8
mesenchymal stem cell
8
pancreatic stellate cell
8
progenitor cell of endocrine pancreas
8
psoas muscle
8
skeletal muscle fiber
8
testis
7
HeLa-S3
7
Peyer's patch
7
aorta
7
cardiac muscle cell
7
chorion membrane
7
epithelial cell of proximal tubule
7
fibroblast of dermis
7
glomerular visceral epithelial cell
7
keratinocyte
7
kidney tubule cell
7
lymphoblastoid cell line
7
temporal lobe
7
upper lobe of left lung
6
SGBS preadipocytes
6
amygdala
6
angular gyrus
6
anterior cingulate cortex
6
cerebellum (Hemisphere)
6
choroid plexus epithelial cell
6
endometrium adenocarcinoma
6
enterocyte
6
esophagus muscularis mucosa
6
foreskin fibroblast
6
glomerular endothelial cell
6
hypothalamus
6
induced pluripotent stem cell
6
layer of hippocampus
6
muscle of trunk
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
right lobe of liver
6
skeletal muscle tissue
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
GM12878
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
NAMALWA cell
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
SK-N-DZ
5
SK-N-SH
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
Life stage
2
embryonic
Date released
February, 2021
2
September, 2022
1
June, 2020
Software used
1
chromhmm
1
macs
1
r
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
month_released!
February, 2021
annotation_type!
target gene predictions
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP