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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
5
cis-regulatory elements
2
Target gene links
Annotation type Category
6
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
6
bed bed3+
1
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
7
in vitro differentiated cells
Biosample term
129
monocyte
87
heart
83
stomach
80
kidney
72
brain
67
lung
67
muscle of arm
64
HeLa-S3
61
A549
61
small intestine
60
adrenal gland
59
placenta
57
muscle of leg
55
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
53
H1-hESC
52
left lung
50
CD8-positive, alpha-beta T cell
50
neural progenitor cell
46
liver
46
thymus
44
right lung
42
B cell
42
hematopoietic multipotent progenitor cell
42
right kidney
41
endothelial cell
41
islet of Langerhans
40
K562
40
renal cortex interstitium
39
renal pelvis
39
retina
36
left kidney
33
spinal cord
32
CD4-positive, alpha-beta memory T cell
32
fibroblast
32
heart left ventricle
32
hepatocyte
32
spleen
31
CD14-positive monocyte
31
macrophage
30
adipose tissue
26
regulatory T cell
25
MCF-7
25
adipocyte
25
smooth muscle cell
24
pancreatic ductal cell
23
epithelial cell of proximal tubule
22
CD8-positive, alpha-beta memory T cell
22
EndoC_BH1
22
T-helper 1 cell
22
natural killer cell
22
pericyte cell
22
trophoblast cell
21
T cell
21
T-helper 17 cell
21
body of pancreas
21
foreskin keratinocyte
21
keratinocyte
21
sigmoid colon
21
tibial nerve
20
breast cancer cell
20
glomerular endothelial cell
20
mononuclear cell
20
pigmented layer of retina
18
HFFc6
18
caudate nucleus
18
foreskin fibroblast
18
ovary
18
pancreatic beta cell
18
subcutaneous adipose tissue
17
T-helper 2 cell
17
astrocyte
17
cardiac muscle cell
17
coronary artery
17
embryonic stem cell
17
endothelial cell of umbilical vein
17
heart right ventricle
17
muscle of trunk
17
pancreas
17
pancreatic acinar cell
17
pancreatic alpha cell
17
thyroid gland
17
transverse colon
16
chorionic villus
16
endothelial cell of hepatic sinusoid
16
fibroblast of lung
16
gastrocnemius medialis
16
induced pluripotent stem cell
16
layer of hippocampus
16
mesenchymal stem cell
16
psoas muscle
16
skeletal muscle tissue
16
testis
15
CD4-positive, alpha-beta T cell
15
fibroblast of cardiac tissue
15
neutrophil
15
osteoblast
15
pancreatic delta cell
15
retinal pigment epithelial cell
15
right atrium auricular region
15
skeletal muscle myoblast
15
substantia nigra
15
upper lobe of left lung
14
GM12878
14
H9
14
endocrine pancreas
14
mammary gland epithelial cell
14
tibial artery
13
HepG2
13
excitatory neuron
13
neurosphere
13
prostate gland
13
skeletal muscle satellite cell
13
temporal lobe
12
Peyer's patch
12
bronchial epithelial cell
12
fibroblast of dermis
12
left renal cortex interstitium
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
12
omental fat pad
11
ascending aorta
11
cerebellum
11
erythroblast
11
left cardiac atrium
11
left renal pelvis
11
lymphoblastoid cell line
11
mammary epithelial cell
11
right renal pelvis
10
22Rv1
10
aorta
10
epithelial cell of prostate
10
frontal cortex
10
gastric cancer cell
10
glomerular visceral epithelial cell
10
lymphocyte
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
10
thoracic aorta
9
Rhabdomyosarcoma
9
SK-N-SH
9
breast epithelium
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
esophagus squamous epithelium
9
hepatic stellate cell
9
kidney tubule cell
9
liposarcoma
9
neuronal stem cell
9
parathyroid adenoma
9
vagina
8
choroid plexus epithelial cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
esophagus muscularis mucosa
8
immortal human breast epithelial cell line cell
8
lower leg skin
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
putamen
8
skeletal muscle fiber
8
tongue
7
Ammon's horn
7
B-lymphoblastoid cell line
7
HEK293
7
IMR-90
7
NAMALWA cell
7
SK-N-DZ
7
SK-N-MC
7
T47D
7
angular gyrus
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
esophagus
7
extended pluripotent stem (EPS) cells
7
eye
7
fibroblast cell line
7
foreskin melanocyte
7
limb
7
mature neutrophil
7
memory B cell
7
skin fibroblast
7
stomach smooth muscle
7
trophoblast
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
Brodmann (1909) area 46
Life stage
4
embryonic
Date released
3
February, 2021
3
September, 2022
June, 2020
March, 2020
1
May, 2021
Software used
2
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
month_released!
June, 2020
March, 2020
Showing 7 of 7 results
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP