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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
binding sites
1
histone modifications
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
2
ChIP-seq
1
DNase-seq
1
pCHi-C
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
3
in vitro differentiated cells
1
stem cell
Biosample term
63
HeLa-S3
61
A549
53
common myeloid progenitor, CD34-positive
49
H1-hESC
42
hematopoietic multipotent progenitor cell
42
islet of Langerhans
41
B cell
40
K562
40
liver
39
endothelial cell
38
neural progenitor cell
32
CD4-positive, alpha-beta memory T cell
32
fibroblast
32
hepatocyte
31
kidney
31
stomach
30
adipose tissue
30
macrophage
28
adrenal gland
28
retina
28
spleen
heart left ventricle
26
regulatory T cell
25
MCF-7
25
tibial nerve
23
body of pancreas
23
epithelial cell of proximal tubule
23
pancreatic ductal cell
22
CD8-positive, alpha-beta memory T cell
22
T cell
22
adipocyte
22
caudate nucleus
22
foreskin keratinocyte
22
natural killer cell
22
pericyte cell
22
sigmoid colon
21
T-helper 1 cell
21
glomerular endothelial cell
21
pancreas
21
subcutaneous adipose tissue
20
breast cancer cell
20
keratinocyte
20
mononuclear cell
20
pigmented layer of retina
20
smooth muscle cell
19
T-helper 17 cell
19
coronary artery
19
heart
19
psoas muscle
19
right atrium auricular region
18
HFFc6
18
endothelial cell of umbilical vein
18
foreskin fibroblast
18
substantia nigra
18
tibial artery
17
CD8-positive, alpha-beta T cell
17
gastrocnemius medialis
17
omental fat pad
17
pancreatic beta cell
17
thyroid gland
17
transverse colon
16
CD14-positive monocyte
16
HepG2
16
endothelial cell of hepatic sinusoid
16
layer of hippocampus
16
osteoblast
16
retinal pigment epithelial cell
16
skeletal muscle tissue
16
upper lobe of left lung
15
CD4-positive, alpha-beta T cell
15
T-helper 2 cell
15
ascending aorta
15
astrocyte
15
cerebellum
15
fibroblast of lung
15
frontal cortex
15
induced pluripotent stem cell
15
mammary gland epithelial cell
15
ovary
15
pancreatic alpha cell
15
pancreatic delta cell
15
skeletal muscle myoblast
14
GM12878
14
endocrine pancreas
14
pancreatic acinar cell
14
prostate gland
14
putamen
13
Peyer's patch
13
bronchial epithelial cell
13
excitatory neuron
13
fibroblast of cardiac tissue
13
heart right ventricle
13
mesenchymal stem cell
13
skeletal muscle satellite cell
13
small intestine
13
temporal lobe
12
Ammon's horn
12
aorta
12
lung
12
lymphoblastoid cell line
12
monocyte
12
neuroblastoma cell
11
brain
11
fibroblast of dermis
11
glomerular visceral epithelial cell
11
mammary epithelial cell
11
testis
10
22Rv1
10
Rhabdomyosarcoma
10
breast epithelium
10
choroid plexus epithelial cell
10
epithelial cell of prostate
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
hepatic stellate cell
10
kidney tubule cell
10
lymphocyte
10
neutrophil
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
thoracic aorta
9
SK-N-DZ
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
erythroblast
9
esophagus
9
liposarcoma
9
parathyroid adenoma
9
vagina
8
B-lymphoblastoid cell line
8
GM12865
8
NAMALWA cell
8
cardiac muscle cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
fibroblast cell line
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
lower leg skin
8
myoepithelial cell of mammary gland
8
naive T cell
8
skeletal muscle fiber
8
thymus
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BE(2)-C
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
CMK
7
Caco-2 cell
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
SK-N-SH
7
T47D
7
WERI-Rb-1
7
amygdala
7
angular gyrus
7
cardiomyocytes (cardiac muscle cell)
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
kidney glomerular epithelial cell
7
mature neutrophil
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
renal cortical epithelial cell
7
right lobe of liver
7
stomach smooth muscle
6
Brodmann (1909) area 46
6
Chondroid Chordoma
6
HUES8
6
SJSA1
6
SW480
6
WI38
6
anterior cingulate cortex
6
chondrocyte
6
fibroblast of breast
6
fibroblast of mammary gland
6
fibroblast of villous mesenchyme
6
hESC cell
6
hypothalamus
6
iPSC derived cell line
6
memory B cell
6
midbrain
6
middle frontal gyrus
6
mucosa of rectum
6
neuroblastoma cell line
6
neuronal stem cell
6
nucleus accumbens
6
occipital lobe
6
plasma cell
Life stage
embryonic
Date released
2
February, 2021
1
June, 2020
1
March, 2020
May, 2021
Software used
3
macs
1
nospecificsoft_customcode
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
month_released!
May, 2021
biosample_term_name!
heart left ventricle
relevant_life_stage!
embryonic
Showing 4 of 4 results
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Download
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP