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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
accessible chromatin
1
binding sites
1
histone modifications
Annotation Category
3
cis-regulatory elements
2
Target gene links
Annotation type Category
2
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
4
in vitro differentiated cells
1
stem cell
Biosample term
131
monocyte
53
HeLa-S3
51
H1-hESC
44
CD8-positive, alpha-beta T cell
44
islet of Langerhans
41
endothelial cell
38
neural progenitor cell
32
fibroblast
32
macrophage
30
hepatocyte
28
retina
25
pancreatic ductal cell
24
kidney
23
EndoC_BH1
22
K562
21
liver
21
smooth muscle cell
20
breast cancer cell
20
pigmented layer of retina
19
HFFc6
19
adipocyte
19
epithelial cell of proximal tubule
19
pericyte cell
19
subcutaneous adipose tissue
18
embryonic stem cell
17
glomerular endothelial cell
17
pancreatic acinar cell
17
pancreatic beta cell
17
regulatory T cell
16
endothelial cell of hepatic sinusoid
16
induced pluripotent stem cell
15
CD14-positive monocyte
15
pancreatic alpha cell
14
B cell
14
heart
14
keratinocyte
13
astrocyte
13
coronary artery
13
excitatory neuron
12
GM12878
12
heart left ventricle
12
lymphoblastoid cell line
12
neuroblastoma cell
12
osteoblast
12
pancreatic delta cell
12
retinal pigment epithelial cell
11
T cell
11
T-helper 1 cell
11
adipose tissue
11
brain
11
erythroblast
11
pancreas
11
right atrium auricular region
11
tibial nerve
10
Rhabdomyosarcoma
10
caudate nucleus
10
frontal cortex
10
gastric cancer cell
10
natural killer cell
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
9
HepG2
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
endothelial cell of umbilical vein
9
liposarcoma
9
mesenchymal stem cell
9
putamen
9
skeletal muscle satellite cell
9
tibial artery
8
Ammon's horn
8
B-lymphoblastoid cell line
8
T-helper 17 cell
8
cardiac muscle cell
8
fibroblast cell line
8
glomerular visceral epithelial cell
8
mammary epithelial cell
8
pituitary stalk
8
skeletal muscle fiber
8
skeletal muscle myoblast
7
CD4-positive helper T cell
7
CD4-positive, alpha-beta T cell
7
H9
7
Jurkat
7
MCF-7
7
amygdala
7
ascending aorta
7
cardiomyocytes (cardiac muscle cell)
7
cerebellum
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
foreskin fibroblast
7
hepatic stellate cell
7
left cardiac atrium
7
mature neutrophil
7
memory B cell
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
neuronal stem cell
7
stomach
7
substantia nigra
6
Chondroid Chordoma
6
HUES8
6
anterior cingulate cortex
6
body of pancreas
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
fibroblast of cardiac tissue
6
hESC cell
6
hypothalamus
6
iPSC derived cell line
6
lymphocyte
6
mammary gland epithelial cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
neutrophil
6
nucleus accumbens
6
omental fat pad
6
placenta
6
plasma cell
6
smooth muscle cell of the coronary artery
6
type I muscle cell
5
cardiac fibroblast
5
A549
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
CyT49
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Ewing sarcoma
5
Fibroblast
5
GM19240
5
Glomerular Capillary Endothelial Cell
5
HCT-116 cell
5
IMR-90
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
KARPAS-422 cell
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Monocyte
5
Myofibroblast
5
Natural Killer T Cell
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Plasma Cell
5
Rh-4 cell
5
SGBS preadipocytes
5
acute myeloid leukemia
5
enterocyte
5
glutamatergic neuron
5
kidney interstitial cell
5
kidney loop of Henle thin ascending limb epithelial cell
5
mast cell
5
mesangial cell
5
osteosarcoma
5
prostate cancer cell line
5
skin fibroblast
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
B-lymphocyte
4
BE(2)-C
4
BJ cell
4
COLO205
4
Caco-2 cell
4
GM06990
4
GM12864
4
GM12865
4
GM18505
4
GM19099
4
GM19193
4
GM19238
Date released
September, 2022
2
February, 2021
1
June, 2020
1
March, 2020
1
May, 2021
Software used
3
macs
1
abc
encode-ccres
1
nospecificsoft_customcode
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
month_released!
September, 2022
software_used.software.name!
encode-ccres
Showing 5 of 5 results
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Download
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP