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Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
Annotation Category
2
Target gene links
Annotation type Category
1
ATAC-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
1
in vitro differentiated cells
1
stem cell
Biosample term
118
monocyte
34
CD8-positive, alpha-beta T cell
16
EndoC_BH1
15
CD14-positive monocyte
12
embryonic stem cell
10
pituitary stalk
6
dendritic cell
6
islet of Langerhans
5
cardiomyocytes (cardiac muscle cell)
5
hepatocyte
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
neutrophil
4
Ammon's horn
4
adipocyte
4
body of pancreas
4
coronary artery
4
psoas muscle
3
B cell
3
C1 segment of cervical spinal cord
3
adrenal gland
3
amygdala
3
anterior cingulate cortex
3
ascending aorta
3
caudate nucleus
3
cerebellum
3
cerebellum (Hemisphere)
3
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
3
frontal cortex
3
gastrocnemius medialis(Muscle - Skeletal)
3
hypothalamus
3
left ventricle myocardium
3
liver
3
nucleus accumbens
3
omental fat pad
3
pancreas
3
putamen
3
right atrium auricular region
3
right lobe of liver
3
subcutaneous adipose tissue
3
substantia nigra
3
tibial artery
3
tibial nerve
2
BJAB cell
2
CD4-positive helper T cell
2
HepG2
2
Jurkat
2
MCF 10A cell
2
T follicular helper cell
2
T-cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
THP-1
2
U937
2
adipose tissue
2
aorta
2
cardiac precursors (cardiac muscle cell)
2
central memory CD8-positive, alpha-beta T cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endothelial cell
2
endothelial cell of umbilical vein
2
gamma-delta T cell
2
heart left ventricle
2
heart right ventricle
2
macrophage
2
mature natural killer cell
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
mesenchymal stem cell
2
mesendoderm
2
naive B cel
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
ovary
2
pancreatic acinar cell
2
pancreatic ductal cell
2
regulatory T cell
2
sigmoid colon
2
small intestine
2
spleen
2
stomach
2
thymus
2
trophoblast cell
1
A549
1
A673
1
B cell, CD19-positive
1
B-lymphoblastoid cell line
1
CD56-positive, CD161-positive immature natural killer cell
1
GM12878
1
H1-hESC
1
H7-hESC
1
H9
1
HAP-1
1
HCT-116 cell
1
HT-29
1
HeLa-S3
1
IMR-90
1
K562
1
KARPAS-422 cell
1
LNCAP
1
LoVo cell
1
MCF-7
1
MDA-MB-231 cell
1
MM.1S
1
NCCIT cell
1
OCI-LY7
1
PC-9
1
Panc1
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
SK-N-SH
1
Schwann cell
1
activated pancreatic stellate cell
1
astrocyte
1
beige adipocyte
1
bipolar neuron
1
bladder (urinary bladder)
1
breast epithelium
1
cardiac fibroblast
1
cardiac muscle cell
1
cardiac muscle cell (pacemaker cell)
1
cardiac ventricle
1
common myeloid progenitor, CD34-positive
1
cytotoxic T cell
1
dorsolateral prefrontal cortex
1
epithelial cell of prostate
1
erythroblast
1
esophagus
1
fibroblast cell line
1
fibroblast of arm
1
fibroblast of dermis
1
fibroblast of lung
1
foreskin fibroblast
1
gastric (mucosa of stomach)
1
gastrocnemius medialis
1
heart
1
hematopoietic multipotent progenitor cell
1
iPS DF 19.11
1
induced pluripotent stem cell
1
intermediate cardiomyocytes
1
intermediate endothelial cell
1
intermediate smooth muscle cell
1
keratinocyte
1
large intestine
1
lung
1
lymphocyte of B lineage (iPSC)
1
mammary epithelial cell
1
mast cell
1
megakaryocyte-erythroid progenitor cell
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
muscle of leg
1
muscle of trunk
1
myeloid dendritic cell
1
myotube
1
naive regulatory T cell
1
natural killer cell
1
neural progenitor cell
1
neuronal stem cell
1
osteoblast
1
pancreatic A cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
pancreatic delta cell
1
pancreatic epsilon cell
1
pancreatic polypeptide-secreting cell
1
placenta
1
quiescent pancreatic stellate cell
1
right cardiac atrium
1
skeletal muscle myoblast
1
smooth muscle cell
1
smooth muscle cell of the coronary artery
1
spinal cord
1
stem cell
1
thyroid gland
1
transverse colon
1
trophoblast
1
type B pancreatic cell
1
uterus
1
white adipose cell
1
white adipose tissue
Date released
3
February, 2021
3
September, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
1
abc
1
nospecificsoft_customcode
Lab
1
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
2
AMP
RFA
2
AMP
Showing 2 of 2 results
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Download
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP