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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
accessible chromatin
1
binding sites
1
histone modifications
Annotation Category
3
cis-regulatory elements
2
Target gene links
Annotation type Category
2
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
4
in vitro differentiated cells
1
stem cell
Biosample term
112
monocyte
64
HeLa-S3
62
A549
54
common myeloid progenitor, CD34-positive
48
CD8-positive, alpha-beta T cell
42
B cell
42
H1-hESC
42
hematopoietic multipotent progenitor cell
41
K562
37
liver
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
31
endothelial cell
31
stomach
30
fibroblast
30
neural progenitor cell
28
adipose tissue
28
adrenal gland
28
spleen
26
MCF-7
26
retina
25
adipocyte
25
islet of Langerhans
24
heart left ventricle
24
kidney
23
sigmoid colon
22
CD8-positive, alpha-beta memory T cell
22
body of pancreas
22
foreskin keratinocyte
22
macrophage
22
pericyte cell
22
tibial nerve
21
T cell
21
keratinocyte
21
pancreas
20
breast cancer cell
20
hepatocyte
20
mononuclear cell
20
natural killer cell
20
pigmented layer of retina
20
psoas muscle
20
smooth muscle cell
19
caudate nucleus
19
foreskin fibroblast
19
regulatory T cell
18
HFFc6
18
coronary artery
18
endothelial cell of umbilical vein
18
gastrocnemius medialis
17
heart
17
thyroid gland
17
tibial artery
17
transverse colon
16
GM12878
16
embryonic stem cell
16
fibroblast of lung
16
retinal pigment epithelial cell
16
right atrium auricular region
16
upper lobe of left lung
15
CD4-positive, alpha-beta T cell
15
HepG2
15
layer of hippocampus
15
mammary gland epithelial cell
15
pancreatic ductal cell
15
skeletal muscle tissue
15
substantia nigra
14
T-helper 1 cell
14
ascending aorta
14
astrocyte
14
endocrine pancreas
14
mesenchymal stem cell
14
neutrophil
14
omental fat pad
14
osteoblast
14
ovary
14
skeletal muscle myoblast
14
small intestine
13
Peyer's patch
13
T-helper 17 cell
13
T-helper 2 cell
13
bronchial epithelial cell
13
fibroblast of cardiac tissue
13
heart right ventricle
13
subcutaneous adipose tissue
12
EndoC_BH1
12
aorta
12
cerebellum
12
excitatory neuron
12
fibroblast of dermis
12
mammary epithelial cell
12
neuroblastoma cell
12
pancreatic beta cell
12
prostate gland
12
skeletal muscle satellite cell
11
Ammon's horn
11
breast epithelium
11
endothelial cell of hepatic sinusoid
11
epithelial cell of prostate
11
erythroblast
11
frontal cortex
11
pancreatic acinar cell
11
putamen
11
temporal lobe
10
22Rv1
10
Rhabdomyosarcoma
10
choroid plexus epithelial cell
10
esophagus squamous epithelium
10
gastric cancer cell
10
lung
10
lymphocyte
10
naive thymus-derived CD4-positive, alpha-beta T cell
10
pancreatic alpha cell
10
thoracic aorta
9
SK-N-DZ
9
SK-N-SH
9
cardiac muscle cell
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
kidney tubule cell
9
liposarcoma
9
pancreatic delta cell
9
parathyroid adenoma
9
testis
9
thymus
8
B-lymphoblastoid cell line
8
GM06990
8
GM12864
8
GM12865
8
GM19240
8
HT-29
8
NAMALWA cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
esophagus
8
esophagus muscularis mucosa
8
fibroblast cell line
8
immortal human breast epithelial cell line cell
8
lower leg skin
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
skeletal muscle fiber
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BE(2)-C
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
CMK
7
Caco-2 cell
7
GM12875
7
GM19238
7
GM19239
7
H9
7
HAP-1
7
Jurkat
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
angular gyrus
7
brain
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
hepatic stellate cell
7
mature neutrophil
7
neuronal stem cell
7
right lobe of liver
7
stomach smooth muscle
6
Brodmann (1909) area 46
6
Chondroid Chordoma
6
Daoy
6
GM08714
6
GM10248
6
GM10266
6
GM12891
6
GM12892
6
GM18507
6
GM23248
6
HCT116
6
HL-60
6
HUES8
6
KARPAS-422 cell
6
LNCAP
6
LNCaP clone FGC
6
LoVo cell
6
MM.1S
6
OCI-LY7
6
PC-9
6
SJSA1
6
SW480
6
WI38
6
chondrocyte
6
fibroblast of breast
6
fibroblast of mammary gland
6
fibroblast of villous mesenchyme
Life stage
embryonic
Date released
2
February, 2021
1
June, 2020
1
March, 2020
1
May, 2021
Software used
3
macs
1
abc
1
nospecificsoft_customcode
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
relevant_life_stage!
embryonic
Showing 5 of 5 results
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Download
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP