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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
chromatin state
Annotation Category
2
Target gene links
2
cis-regulatory elements
Annotation type Category
3
ChIP-seq
3
DNase-seq
1
pCHi-C
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
3
in vitro differentiated cells
1
stem cell
Biosample term
62
heart
61
stomach
60
HeLa-S3
52
lung
50
muscle of arm
49
brain
48
H1-hESC
46
small intestine
45
adrenal gland
44
kidney
41
muscle of back
41
placenta
40
A549
40
common myeloid progenitor, CD34-positive
40
large intestine
40
muscle of leg
39
left lung
34
islet of Langerhans
33
right lung
33
thymus
32
right kidney
31
liver
30
K562
30
hematopoietic multipotent progenitor cell
30
renal cortex interstitium
29
renal pelvis
27
B cell
27
left kidney
24
monocyte
24
spleen
23
CD4-positive, alpha-beta memory T cell
22
adipose tissue
22
heart left ventricle
22
spinal cord
20
epithelial cell of proximal tubule
19
HFFc6
19
T-helper 1 cell
19
body of pancreas
19
regulatory T cell
18
tibial nerve
17
T-helper 17 cell
17
glomerular endothelial cell
17
neural progenitor cell
16
sigmoid colon
16
subcutaneous adipose tissue
15
CD8-positive, alpha-beta memory T cell
15
MCF-7
15
caudate nucleus
15
foreskin keratinocyte
15
ovary
14
H9
14
T-helper 2 cell
14
coronary artery
14
hepatocyte
14
omental fat pad
14
right atrium auricular region
14
substantia nigra
14
trophoblast cell
13
heart right ventricle
13
mononuclear cell
13
psoas muscle
13
transverse colon
12
CD14-positive monocyte
12
CD8-positive, alpha-beta T cell
12
ascending aorta
12
cerebellum
12
chorionic villus
12
endothelial cell of umbilical vein
12
frontal cortex
12
gastrocnemius medialis
12
muscle of trunk
12
natural killer cell
12
skeletal muscle tissue
12
thyroid gland
12
tibial artery
11
EndoC_BH1
11
cardiomyocytes
11
endocrine pancreas
11
fibroblast of lung
11
foreskin fibroblast
11
neutrophil
11
pancreas
11
retina
11
testis
10
CD4-positive, alpha-beta T cell
10
GM12878
10
Peyer's patch
10
T cell
10
layer of hippocampus
10
left renal cortex interstitium
10
macrophage
10
naive thymus-derived CD4-positive, alpha-beta T cell
10
neurosphere
10
putamen
9
Ammon's horn
9
aorta
9
cardiac muscle cell
9
extended pluripotent stem (EPS) cells
9
glomerular visceral epithelial cell
9
induced pluripotent stem cell
9
left renal pelvis
9
right renal pelvis
9
skeletal muscle myoblast
9
upper lobe of left lung
8
cardiomyocytes (cardiac muscle cell)
8
dermis blood vessel endothelial cell
8
esophagus
8
esophagus muscularis mucosa
8
esophagus squamous epithelium
8
fibroblast of dermis
8
lower leg skin
8
lymphocyte
8
progenitor cell of endocrine pancreas
7
SK-N-SH
7
adipocyte
7
breast epithelium
7
endothelial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
mesenchymal stem cell
7
naive thymus-derived CD8-positive, alpha-beta T cell
7
right lobe of liver
7
right renal cortex interstitium
7
temporal lobe
6
22Rv1
6
HepG2
6
SK-N-DZ
6
WI38
6
amygdala
6
angular gyrus
6
anterior cingulate cortex
6
bronchial epithelial cell
6
cardiac precursors (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
chorion membrane
6
cingulate gyrus
6
colonic mucosa
6
duodenal mucosa
6
endodermal cell
6
endometrium adenocarcinoma
6
epithelial cell of prostate
6
eye
6
fibroblast of breast
6
fibroblast of cardiac tissue
6
gamma-delta T cell
6
gastroesophageal sphincter
6
hypothalamus
6
iPSC derived cell line
6
immortal human breast epithelial cell line cell
6
kidney interstitial cell
6
kidney tubule cell
6
lymphoblastoid cell line
6
mammary gland epithelial cell
6
mucosa of rectum
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
naive T cell
6
nucleus accumbens
6
olfactory receptor cell
6
osteoblast
6
parathyroid adenoma
6
prostate gland
6
thoracic aorta
5
C1 segment of cervical spinal cord
5
HCT116
5
HEK293
5
LNCaP clone FGC
5
T follicular helper cell
5
T47D
5
cardiac fibroblast
5
central memory CD8-positive, alpha-beta T cell
5
choroid plexus epithelial cell
5
effector memory CD8-positive, alpha-beta T cell
5
foreskin melanocyte
5
gastrocnemius medialis(Muscle - Skeletal)
5
keratinocyte
5
kidney cortex collecting duct principal cell
5
kidney epithelial cell
5
kidney glomerular epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
left cardiac atrium
5
left ventricle myocardium
5
limb
5
memory B cell
5
mesangial cell
5
mesodermal cell
5
stomach smooth muscle
5
tongue
5
trophoblast
5
vagina
4
Brodmann (1909) area 46
4
CyT49
4
GM06990
4
GM08714
4
GM12864
4
GM12865
4
GM12875
4
GM19238
4
GM19239
4
GM19240
Life stage
3
embryonic
Date released
2
September, 2022
1
February, 2021
1
March, 2020
Software used
macs
2
r
1
encode-ccres
1
nospecificsoft_customcode
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
4
AMP
RFA
4
AMP
software_used.software.name!
macs
annotation_type!
chromatin state
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP