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Schema
Citing CMDGA
Clear Filters
Annotation type
1
binding sites
1
candidate regulatory elements
1
chromatin state
1
histone modifications
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
in vitro differentiated cells
Biosample term
105
monocyte
43
CD8-positive, alpha-beta T cell
43
stomach
42
heart
41
kidney
35
brain
35
neural progenitor cell
33
lung
33
muscle of arm
30
adrenal gland
30
muscle of leg
30
placenta
30
small intestine
29
large intestine
29
retina
28
common myeloid progenitor, CD34-positive
28
muscle of back
26
left lung
25
A549
23
CD14-positive monocyte
23
thymus
22
liver
22
right lung
21
hematopoietic multipotent progenitor cell
20
breast cancer cell
20
pigmented layer of retina
20
renal cortex interstitium
20
right kidney
19
B cell
19
renal pelvis
18
left kidney
18
spinal cord
18
spleen
17
heart left ventricle
16
embryonic stem cell
15
MCF-7
15
adipocyte
14
CD4-positive, alpha-beta memory T cell
13
HepG2
13
foreskin fibroblast
13
hepatocyte
13
keratinocyte
12
CD4-positive, alpha-beta T cell
12
K562
12
adipose tissue
12
cardiac muscle cell
12
foreskin keratinocyte
12
neuroblastoma cell
11
EndoC_BH1
11
endothelial cell of umbilical vein
11
mammary epithelial cell
11
trophoblast cell
10
fibroblast of lung
10
gastric cancer cell
10
sigmoid colon
9
Rhabdomyosarcoma
9
coronary artery
9
diffuse intrinsic pontine glioma
9
endothelial cell of hepatic sinusoid
9
islet of Langerhans
9
liposarcoma
9
muscle of trunk
9
neuronal stem cell
9
osteoblast
9
retinal pigment epithelial cell
8
CD8-positive, alpha-beta memory T cell
8
H9
8
T-helper 1 cell
8
bronchial epithelial cell
8
natural killer cell
8
pancreas
8
pituitary stalk
8
skeletal muscle myoblast
8
testis
8
tibial nerve
8
upper lobe of left lung
7
B-lymphoblastoid cell line
7
GM12878
7
HeLa-S3
7
T-cell acute lymphoblastic leukemia
7
T-helper 17 cell
7
T-helper 2 cell
7
body of pancreas
7
endothelial cell
7
esophageal adenocarcinoma
7
fibroblast cell line
7
layer of hippocampus
7
mature neutrophil
7
ovary
7
pericyte cell
7
regulatory T cell
7
substantia nigra
7
temporal lobe
7
thyroid gland
7
transverse colon
6
22Rv1
6
CD4-positive helper T cell
6
Chondroid Chordoma
6
H1-hESC
6
HEK293
6
IMR-90
6
Jurkat
6
Peyer's patch
6
SK-N-SH
6
caudate nucleus
6
chondrocyte
6
fibroblast of cardiac tissue
6
foreskin melanocyte
6
gastrocnemius medialis
6
hESC cell
6
heart right ventricle
6
left cardiac atrium
6
mammary gland epithelial cell
6
mesenchymal stem cell
6
mononuclear cell
6
neuroblastoma cell line
6
neutrophil
6
psoas muscle
6
skeletal muscle tissue
5
CD14-positive, CD16-negative classical monocyte
5
Ewing sarcoma
5
GM06990
5
GM12864
5
GM12865
5
GM12875
5
HAP-1
5
HL-60
5
HT-29
5
KARPAS-422 cell
5
LNCAP
5
MM.1S
5
OCI-LY7
5
PC-9
5
SGBS preadipocytes
5
SK-N-MC
5
T cell
5
T-cell
5
astrocyte
5
chorionic villus
5
dermis blood vessel endothelial cell
5
epithelial cell of prostate
5
fibroblast
5
fibroblast of dermis
5
left renal pelvis
5
neurosphere
5
omental fat pad
5
osteosarcoma
5
prostate cancer cell line
5
prostate gland
5
smooth muscle cell
5
thoracic aorta
5
tibial artery
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
BE(2)-C
4
BJ cell
4
CD1c-positive myeloid dendritic cell
4
CMK
4
Caco-2 cell
4
GM08714
4
GM12873
4
GM12891
4
GM12892
4
GM19238
4
GM19239
4
GM19240
4
GM23248
4
HCT-116 cell
4
HS-SY-2 cell
4
LHCN-M2
4
LoVo cell
4
MG63
4
Mantle cell lymphoma
4
NAMALWA cell
4
NT2-D1 cell
4
OCI-LY1
4
PC-3
4
RPMI8226
4
RWPE1
4
Rh-4 cell
4
SK-N-DZ
4
SW480
4
Th1 cell
4
angular gyrus
4
aorta
4
aortic endothelial cell
4
breast epithelium
4
choroid plexus epithelial cell
4
colonic mucosa
4
diffuse large B-cell lymphoma
4
duodenal mucosa
4
endodermal cell
4
esophageal squamous cell carcinoma
4
fibroblast of villous mesenchyme
4
mesodermal cell
4
myoepithelial cell of mammary gland
4
naive thymus-derived CD4-positive, alpha-beta T cell
Life stage
2
embryonic
Date released
3
February, 2021
1
May, 2021
1
September, 2022
Software used
2
macs
r
1
abc
1
chromhmm
1
encode-ccres
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
software_used.software.name!
r
Showing 5 of 5 results
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Download
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP