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Schema
Citing CMDGA
Clear Filters
Annotation type
1
binding sites
1
candidate regulatory elements
1
chromatin state
1
histone modifications
Annotation Category
4
cis-regulatory elements
Annotation type Category
4
ChIP-seq
3
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
in vitro differentiated cells
Biosample term
89
monocyte
41
heart
41
stomach
38
CD8-positive, alpha-beta T cell
35
brain
34
kidney
33
lung
33
muscle of arm
29
muscle of leg
29
placenta
29
small intestine
28
adrenal gland
28
large intestine
28
muscle of back
27
common myeloid progenitor, CD34-positive
26
left lung
25
neural progenitor cell
24
A549
22
right lung
22
thymus
21
hematopoietic multipotent progenitor cell
20
breast cancer cell
20
renal cortex interstitium
20
right kidney
19
renal pelvis
18
left kidney
17
spinal cord
16
B cell
16
liver
16
spleen
15
heart left ventricle
14
CD4-positive, alpha-beta memory T cell
14
MCF-7
12
foreskin fibroblast
12
foreskin keratinocyte
12
neuroblastoma cell
11
CD4-positive, alpha-beta T cell
11
HepG2
11
K562
10
adipocyte
10
cardiac muscle cell
10
endothelial cell of umbilical vein
10
gastric cancer cell
10
keratinocyte
10
mammary epithelial cell
9
Rhabdomyosarcoma
9
diffuse intrinsic pontine glioma
9
liposarcoma
9
sigmoid colon
8
CD14-positive monocyte
8
CD8-positive, alpha-beta memory T cell
8
adipose tissue
8
body of pancreas
8
bronchial epithelial cell
8
fibroblast of lung
8
neuronal stem cell
8
testis
8
trophoblast cell
8
upper lobe of left lung
7
B-lymphoblastoid cell line
7
H9
7
Peyer's patch
7
T-cell acute lymphoblastic leukemia
7
embryonic stem cell
7
esophageal adenocarcinoma
7
fibroblast cell line
7
hepatocyte
7
layer of hippocampus
7
mature neutrophil
7
muscle of trunk
7
natural killer cell
7
pancreas
7
skeletal muscle myoblast
7
substantia nigra
7
temporal lobe
6
22Rv1
6
Chondroid Chordoma
6
GM12878
6
HEK293
6
HeLa-S3
6
T-helper 1 cell
6
acute myeloid leukemia
6
aorta
6
caudate nucleus
6
foreskin melanocyte
6
hESC cell
6
heart right ventricle
6
left cardiac atrium
6
mononuclear cell
6
neuroblastoma cell line
6
neutrophil
6
osteoblast
6
psoas muscle
6
skeletal muscle tissue
6
transverse colon
5
CD14-positive, CD16-negative classical monocyte
5
Ewing sarcoma
5
GM06990
5
GM12864
5
GM12865
5
GM12875
5
H1-hESC
5
HL-60
5
IMR-90
5
SK-N-MC
5
SK-N-SH
5
T cell
5
T-helper 17 cell
5
T-helper 2 cell
5
WI38
5
angular gyrus
5
ascending aorta
5
chorionic villus
5
dermis blood vessel endothelial cell
5
fibroblast of cardiac tissue
5
gastrocnemius medialis
5
left renal pelvis
5
mammary gland epithelial cell
5
neurosphere
5
osteosarcoma
5
ovary
5
prostate cancer cell line
5
prostate gland
5
regulatory T cell
5
retina
5
thyroid gland
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
BE(2)-C
4
BJ cell
4
CD1c-positive myeloid dendritic cell
4
CMK
4
Caco-2 cell
4
GM08714
4
GM12873
4
GM12891
4
GM12892
4
GM19238
4
GM19239
4
GM19240
4
GM23248
4
HAP-1
4
HS-SY-2 cell
4
HT-29
4
Jurkat
4
KARPAS-422 cell
4
LHCN-M2
4
LNCAP
4
MG63
4
MM.1S
4
Mantle cell lymphoma
4
NAMALWA cell
4
NT2-D1 cell
4
OCI-LY1
4
OCI-LY7
4
PC-3
4
PC-9
4
RPMI8226
4
RS4-11 cell
4
RWPE1
4
Rh-4 cell
4
SK-N-DZ
4
SW480
4
Th1 cell
4
WERI-Rb-1
4
breast epithelium
4
choroid plexus epithelial cell
4
colonic mucosa
4
diffuse large B-cell lymphoma
4
duodenal mucosa
4
endodermal cell
4
endothelial cell of hepatic sinusoid
4
epithelial cell of prostate
4
esophageal squamous cell carcinoma
4
fibroblast of dermis
4
fibroblast of villous mesenchyme
4
mesenchymal stem cell
4
mesodermal cell
4
myoepithelial cell of mammary gland
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
right renal cortex interstitium
4
right renal pelvis
4
squamous cell lung carcinoma
4
synovial sarcoma cell
4
tibial nerve
4
tongue
4
tracheal epithelial cell
4
triple-negative breast cancer
3
B-lymphocyte
3
COLO-320 cell
3
COLO205
3
DND-41 cell
3
Daoy
3
GM10248
3
GM10266
3
GM10847
3
GM12801
Life stage
2
embryonic
Date released
3
February, 2021
1
September, 2022
Software used
2
macs
r
1
chromhmm
1
encode-ccres
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
software_used.software.name!
r
Showing 4 of 4 results
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Download
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP