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Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
candidate regulatory elements
1
chromatin state
Annotation Category
2
Target gene links
2
cis-regulatory elements
Annotation type Category
2
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
3
in vitro differentiated cells
1
stem cell
Biosample term
58
HeLa-S3
43
stomach
42
heart
41
H1-hESC
35
lung
34
brain
34
muscle of arm
33
kidney
32
adrenal gland
32
small intestine
30
muscle of leg
28
common myeloid progenitor, CD34-positive
28
large intestine
28
muscle of back
28
placenta
26
K562
26
left lung
26
liver
25
islet of Langerhans
23
A549
23
CD14-positive monocyte
23
thymus
22
right kidney
22
right lung
21
renal cortex interstitium
20
renal pelvis
19
B cell
19
HFFc6
19
heart left ventricle
19
hematopoietic multipotent progenitor cell
18
left kidney
17
spinal cord
17
spleen
16
macrophage
15
CD8-positive, alpha-beta T cell
14
CD4-positive, alpha-beta T cell
14
CD4-positive, alpha-beta memory T cell
14
H9
14
adipose tissue
14
body of pancreas
14
endothelial cell of umbilical vein
14
subcutaneous adipose tissue
14
tibial nerve
13
adipocyte
13
coronary artery
13
fibroblast
12
caudate nucleus
12
endothelial cell
12
hepatocyte
12
smooth muscle cell
11
GM12878
11
MCF-7
11
foreskin keratinocyte
11
heart right ventricle
11
monocyte
11
natural killer cell
11
ovary
11
pancreas
11
pericyte cell
11
psoas muscle
11
sigmoid colon
11
substantia nigra
11
tibial artery
10
ascending aorta
10
cardiac muscle cell
10
fibroblast of lung
10
foreskin fibroblast
10
naive thymus-derived CD4-positive, alpha-beta T cell
10
omental fat pad
10
pituitary stalk
10
trophoblast cell
9
T cell
9
T-helper 1 cell
9
gastrocnemius medialis
9
mesenchymal stem cell
9
muscle of trunk
9
neutrophil
9
putamen
9
regulatory T cell
9
right atrium auricular region
9
thyroid gland
8
CD8-positive, alpha-beta memory T cell
8
T-helper 17 cell
8
T-helper 2 cell
8
aorta
8
cerebellum
8
chorionic villus
8
frontal cortex
8
induced pluripotent stem cell
8
keratinocyte
8
layer of hippocampus
8
left cardiac atrium
8
left renal cortex interstitium
8
retina
8
skeletal muscle myoblast
8
testis
7
Ammon's horn
7
HepG2
7
Peyer's patch
7
endocrine pancreas
7
left renal pelvis
7
lymphocyte
7
mature neutrophil
7
mononuclear cell
7
neurosphere
7
right renal cortex interstitium
7
skeletal muscle tissue
7
temporal lobe
7
transverse colon
6
SK-N-SH
6
T-cell
6
angular gyrus
6
breast epithelium
6
dendritic cell
6
dermis blood vessel endothelial cell
6
embryonic stem cell
6
erythroblast
6
esophagus
6
esophagus muscularis mucosa
6
esophagus squamous epithelium
6
fibroblast of dermis
6
iPSC derived cell line
6
lower leg skin
6
lymphoblastoid cell line
6
mammary epithelial cell
6
neural progenitor cell
6
olfactory receptor cell
6
right lobe of liver
6
right renal pelvis
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
EndoC_BH1
5
WI38
5
alternatively activated macrophage
5
amygdala
5
anterior cingulate cortex
5
astrocyte
5
cerebellum (Hemisphere)
5
cingulate gyrus
5
colonic mucosa
5
duodenal mucosa
5
epithelial cell of prostate
5
gastroesophageal sphincter
5
hypothalamus
5
mammary gland epithelial cell
5
mucosa of rectum
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
nucleus accumbens
5
pancreatic delta cell
5
parathyroid adenoma
5
prostate gland
5
thoracic aorta
4
22Rv1
4
C1 segment of cervical spinal cord
4
CyT49
4
HCT116
4
HEK293
4
HUES8
4
IMR-90
4
SK-N-DZ
4
basal cell
4
bronchial epithelial cell
4
cardiac fibroblast
4
cardiomyocytes (cardiac muscle cell)
4
cartilage tissue
4
choroid plexus epithelial cell
4
colon epithelial cell
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endodermal cell
4
endothelial cell of hepatic sinusoid
4
epithelial cell of esophagus
4
epithelial cell of proximal tubule
4
eye
4
fibroblast of breast
4
fibroblast of cardiac tissue
4
foreskin melanocyte
4
gastrocnemius medialis(Muscle - Skeletal)
4
inflammatory macrophage
4
left ventricle myocardium
4
memory B cell
4
mesendoderm
4
mesodermal cell
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
myofibroblast cell
4
naive B cell
4
osteoblast
4
pancreatic acinar cell
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic ductal cell
4
peripheral blood mononuclear cell
4
right cardiac atrium
4
skeletal muscle satellite cell
4
stomach smooth muscle
4
subcutaneous abdominal adipose tissue
4
tongue
4
trophoblast
4
upper lobe of left lung
Life stage
2
embryonic
Date released
1
February, 2021
1
March, 2020
1
May, 2021
1
September, 2022
Software used
macs
r
1
abc
1
chromhmm
1
encode-ccres
1
nospecificsoft_customcode
Lab
3
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
4
AMP
RFA
4
AMP
software_used.software.name!
r
macs
biosample_term_name!
GM19239
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP