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Citing CMDGA
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Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
pCHi-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
in vitro differentiated cells
1
stem cell
Biosample term
116
monocyte
58
HeLa-S3
49
heart
47
CD8-positive, alpha-beta T cell
47
stomach
46
kidney
H1-hESC
40
brain
35
lung
35
muscle of arm
33
adrenal gland
33
liver
33
retina
33
small intestine
32
islet of Langerhans
32
muscle of leg
32
placenta
31
endothelial cell
30
fibroblast
30
large intestine
30
macrophage
29
K562
28
common myeloid progenitor, CD34-positive
28
muscle of back
26
A549
26
left lung
26
thymus
23
CD14-positive monocyte
23
heart left ventricle
23
hepatocyte
23
right lung
22
B cell
22
renal cortex interstitium
22
renal pelvis
22
right kidney
21
spinal cord
21
spleen
20
breast cancer cell
20
pericyte cell
20
pigmented layer of retina
19
HFFc6
19
smooth muscle cell
18
left kidney
17
adipose tissue
17
keratinocyte
17
pancreas
17
tibial nerve
16
MCF-7
16
endothelial cell of hepatic sinusoid
16
subcutaneous adipose tissue
15
CD4-positive, alpha-beta T cell
15
EndoC_BH1
15
HepG2
15
caudate nucleus
15
coronary artery
15
endothelial cell of umbilical vein
15
foreskin fibroblast
15
pancreatic ductal cell
14
CD4-positive, alpha-beta memory T cell
14
GM12878
14
H9
14
T cell
14
regulatory T cell
13
astrocyte
13
body of pancreas
13
tibial artery
12
heart right ventricle
12
lymphoblastoid cell line
12
mammary epithelial cell
12
neuroblastoma cell
12
osteoblast
12
pancreatic beta cell
12
putamen
12
right atrium auricular region
12
substantia nigra
11
erythroblast
11
excitatory neuron
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
natural killer cell
11
neutrophil
11
omental fat pad
11
ovary
11
pancreatic acinar cell
11
psoas muscle
11
sigmoid colon
11
skeletal muscle myoblast
10
Rhabdomyosarcoma
10
fibroblast of lung
10
gastric cancer cell
10
pancreatic alpha cell
10
testis
10
thyroid gland
9
Ammon's horn
9
ascending aorta
9
bronchial epithelial cell
9
cardiac muscle cell
9
foreskin keratinocyte
9
frontal cortex
9
layer of hippocampus
9
left cardiac atrium
9
liposarcoma
9
muscle of trunk
9
pancreatic delta cell
9
skeletal muscle satellite cell
9
transverse colon
9
trophoblast cell
9
upper lobe of left lung
8
B-lymphoblastoid cell line
8
CD8-positive, alpha-beta memory T cell
8
cerebellum
8
fibroblast cell line
8
fibroblast of cardiac tissue
8
gastrocnemius medialis
8
pituitary stalk
8
prostate gland
8
skeletal muscle tissue
7
HEK293
7
IMR-90
7
Jurkat
7
Peyer's patch
7
T-helper 1 cell
7
aorta
7
choroid plexus epithelial cell
7
left renal cortex interstitium
7
left renal pelvis
7
lymphocyte
7
mature neutrophil
7
temporal lobe
6
22Rv1
6
GM06990
6
GM12864
6
GM12865
6
GM19240
6
HAP-1
6
HUES8
6
KARPAS-422 cell
6
LNCAP
6
PC-9
6
breast epithelium
6
colon epithelial cell
6
diffuse intrinsic pontine glioma
6
epithelial cell of prostate
6
iPSC derived cell line
6
induced pluripotent stem cell
6
mesenchymal stem cell
6
mononuclear cell
6
right renal cortex interstitium
6
right renal pelvis
6
trophoblast
6
uterus
5
cardiac fibroblast
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
BE(2)-C
5
BJ cell
5
CD14-positive, CD16-negative classical monocyte
5
CD1c-positive myeloid dendritic cell
5
CD4-positive helper T cell
5
CMK
5
Caco-2 cell
5
Chondroid Chordoma
5
CyT49
5
Ewing sarcoma
5
GM12875
5
GM19238
5
GM19239
5
GM23248
5
HCT-116 cell
5
HL-60
5
HT-29
5
LoVo cell
5
MG63
5
MM.1S
5
SK-N-MC
5
SW480
5
T-helper 17 cell
5
T-helper 2 cell
5
acute myeloid leukemia
5
amygdala
5
chorionic villus
5
dermis blood vessel endothelial cell
5
enterocyte
5
esophageal adenocarcinoma
5
esophagus muscularis mucosa
5
esophagus squamous epithelium
5
fibroblast of dermis
5
glutamatergic neuron
5
hepatic stellate cell
5
mammary gland epithelial cell
5
midbrain
5
neurosphere
5
prostate cancer cell line
5
renal cortical epithelial cell
5
retinal pigment epithelial cell
5
right lobe of liver
5
skeletal muscle fiber
5
smooth muscle cell of the coronary artery
Date released
1
March, 2020
Software used
1
nospecificsoft_customcode
Lab
1
AMP-T2D consortium
Project
1
AMP
RFA
1
AMP
software_used.software.name!
r
biosample_term_name!
H1-hESC
biosample_type!
in vitro differentiated cells
Showing 1 of 1 results
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Download
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP