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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
accessible chromatin
1
binding sites
1
candidate regulatory elements
1
chromatin state
1
histone modifications
Annotation Category
5
cis-regulatory elements
2
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
6
bed bed3+
1
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
6
in vitro differentiated cells
1
stem cell
Biosample term
114
monocyte
58
HeLa-S3
49
heart
47
stomach
44
CD8-positive, alpha-beta T cell
44
H1-hESC
40
brain
38
kidney
36
neural progenitor cell
35
lung
35
muscle of arm
33
adrenal gland
33
liver
33
retina
33
small intestine
32
muscle of leg
32
placenta
31
islet of Langerhans
30
large intestine
29
K562
28
common myeloid progenitor, CD34-positive
28
muscle of back
26
A549
26
left lung
26
thymus
23
CD14-positive monocyte
23
heart left ventricle
23
right lung
22
B cell
22
hematopoietic multipotent progenitor cell
22
renal cortex interstitium
22
renal pelvis
22
right kidney
21
spinal cord
21
spleen
20
breast cancer cell
20
pigmented layer of retina
19
HFFc6
18
adipocyte
18
left kidney
17
adipose tissue
17
pancreas
17
tibial nerve
16
MCF-7
16
embryonic stem cell
16
subcutaneous adipose tissue
15
HepG2
15
cardiac muscle cell
15
caudate nucleus
15
coronary artery
15
endothelial cell of umbilical vein
15
foreskin fibroblast
15
macrophage
14
CD4-positive, alpha-beta memory T cell
14
GM12878
14
H9
13
CD4-positive, alpha-beta T cell
13
EndoC_BH1
13
body of pancreas
13
foreskin keratinocyte
13
keratinocyte
13
retinal pigment epithelial cell
13
tibial artery
12
heart right ventricle
12
lymphoblastoid cell line
12
mammary epithelial cell
12
neuroblastoma cell
12
osteoblast
12
putamen
12
regulatory T cell
12
right atrium auricular region
12
skeletal muscle myoblast
12
substantia nigra
12
trophoblast cell
11
hepatocyte
11
natural killer cell
11
neutrophil
11
omental fat pad
11
ovary
11
psoas muscle
11
sigmoid colon
10
Rhabdomyosarcoma
10
fibroblast of lung
10
gastric cancer cell
10
mesenchymal stem cell
10
naive thymus-derived CD4-positive, alpha-beta T cell
10
neuronal stem cell
10
pancreatic ductal cell
10
testis
10
thyroid gland
9
Ammon's horn
9
ascending aorta
9
bronchial epithelial cell
9
diffuse intrinsic pontine glioma
9
fibroblast
9
frontal cortex
9
layer of hippocampus
9
left cardiac atrium
9
liposarcoma
9
muscle of trunk
9
transverse colon
9
upper lobe of left lung
8
B-lymphoblastoid cell line
8
CD8-positive, alpha-beta memory T cell
8
T cell
8
cerebellum
8
endothelial cell
8
fibroblast cell line
8
gastrocnemius medialis
8
pituitary stalk
8
prostate gland
8
skeletal muscle tissue
7
HEK293
7
IMR-90
7
Jurkat
7
Peyer's patch
7
T-helper 1 cell
7
aorta
7
choroid plexus epithelial cell
7
esophageal adenocarcinoma
7
left renal cortex interstitium
7
left renal pelvis
7
lymphocyte
7
mammary gland epithelial cell
7
mature neutrophil
7
mesendoderm
7
temporal lobe
6
22Rv1
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
GM12865
6
GM19240
6
HAP-1
6
HL-60
6
HT-29
6
HUES8
6
KARPAS-422 cell
6
LNCAP
6
MM.1S
6
PC-9
6
breast epithelium
6
chondrocyte
6
epithelial cell of prostate
6
fibroblast of cardiac tissue
6
foreskin melanocyte
6
hESC cell
6
iPSC derived cell line
6
mononuclear cell
6
neuroblastoma cell line
6
right renal cortex interstitium
6
right renal pelvis
6
trophoblast
6
uterus
5
cardiac fibroblast
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
BE(2)-C
5
BJ cell
5
CD14-positive, CD16-negative classical monocyte
5
CD1c-positive myeloid dendritic cell
5
CMK
5
Caco-2 cell
5
CyT49
5
Ewing sarcoma
5
GM12875
5
GM19238
5
GM19239
5
GM23248
HCT-116 cell
5
LoVo cell
5
MG63
5
SGBS preadipocytes
5
SK-N-MC
5
SW480
5
T-helper 17 cell
5
T-helper 2 cell
5
acute myeloid leukemia
5
amygdala
5
chorionic villus
5
dermis blood vessel endothelial cell
5
esophagus muscularis mucosa
5
esophagus squamous epithelium
5
fibroblast of dermis
5
midbrain
5
neurosphere
5
osteosarcoma
5
prostate cancer cell line
5
renal cortical epithelial cell
5
right lobe of liver
5
smooth muscle cell of the coronary artery
5
thoracic aorta
4
B-lymphocyte
4
C1 segment of cervical spinal cord
4
CD4-positive helper T cell
4
COLO205
4
Daoy
Life stage
2
embryonic
Date released
3
February, 2021
1
June, 2020
1
March, 2020
1
May, 2021
1
September, 2022
Software used
3
macs
r
1
abc
1
chromhmm
1
encode-ccres
1
nospecificsoft_customcode
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
software_used.software.name!
r
biosample_term_name!
HCT-116 cell
Showing 7 of 7 results
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Download
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP