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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
target gene predictions
Annotation Category
2
Target gene links
2
cis-regulatory elements
Annotation type Category
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
2
in vitro differentiated cells
1
cell line
1
stem cell
Biosample term
52
HeLa-S3
39
H1-hESC
28
endothelial cell
28
fibroblast
28
macrophage
27
monocyte
26
islet of Langerhans
25
retina
20
pigmented layer of retina
19
HFFc6
19
pericyte cell
19
smooth muscle cell
18
K562
17
hepatocyte
15
CD14-positive monocyte
15
liver
13
EndoC_BH1
13
excitatory neuron
13
subcutaneous adipose tissue
12
coronary artery
12
kidney
12
pancreatic beta cell
12
pancreatic ductal cell
11
T cell
11
adipocyte
11
astrocyte
11
neural progenitor cell
11
pancreatic acinar cell
11
pancreatic alpha cell
10
B cell
10
CD8-positive, alpha-beta T cell
10
endothelial cell of hepatic sinusoid
10
pancreas
10
pancreatic delta cell
10
pituitary stalk
10
right atrium auricular region
10
tibial artery
10
tibial nerve
9
adipose tissue
9
putamen
9
retinal pigment epithelial cell
8
GM12878
8
caudate nucleus
8
frontal cortex
8
glutamatergic neuron
8
heart
8
heart left ventricle
8
induced pluripotent stem cell
8
regulatory T cell
7
Ammon's horn
7
H9
7
embryonic stem cell
7
erythroblast
7
lymphoblastoid cell line
7
mesenchymal stem cell
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
natural killer cell
7
omental fat pad
7
skeletal muscle fiber
7
type II pneumocyte
6
CD4-positive helper T cell
6
SGBS preadipocytes
6
ascending aorta
6
body of pancreas
6
cerebellum
6
colon epithelial cell
6
cortical cell of adrenal gland
6
dendritic cell
6
enterocyte
6
iPSC derived cell line
6
keratinocyte
6
lymphocyte
6
memory B cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
olfactory receptor cell
6
osteoblast
6
skeletal muscle satellite cell
6
stomach
6
substantia nigra
6
type I muscle cell
6
type II muscle cell
5
cardiac fibroblast
5
HUES8
5
adrenal gland
5
amygdala
5
anterior cingulate cortex
5
basal cell
5
brain
5
cardiac muscle cell
5
cerebellum (Hemisphere)
5
chondrocyte
5
endothelial cell of umbilical vein
5
fibroblast of cardiac tissue
5
gabaergic neuron
5
hypothalamus
5
inhibitory neuron
5
naive B cell
5
neutrophil
5
nucleus accumbens
5
pancreatic stellate cell
5
psoas muscle
5
spleen
4
C1 segment of cervical spinal cord
4
CD4-positive, alpha-beta T cell
4
CyT49
4
HepG2
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
T-helper 1 cell
4
activated CD4-positive, alpha-beta T cell
4
blood vessel smooth muscle cell
4
cardiomyocytes (cardiac muscle cell)
4
cartilage tissue
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
gastrocnemius medialis(Muscle - Skeletal)
4
glomerular visceral epithelial cell
4
heart right ventricle
4
hepatic stellate cell
4
left ventricle myocardium
4
luminal epithelial cell of mammary gland
4
mammary gland epithelial cell
4
megakaryocyte
4
mesothelial cell
4
myofibroblast cell
4
ovary
4
pancreatic A cell
4
pancreatic polypeptide-secreting cell
4
right lobe of liver
4
skeletal muscle myoblast
4
skin fibroblast
4
small intestine
4
smooth muscle cell of the esophagus
4
spinal cord
4
thymus
4
type B pancreatic cell
4
type I pneumocyte
3
Jurkat
3
Schwann cell
3
T follicular helper cell
3
T-helper 17 cell
3
T-helper 2 cell
3
U937
3
activated CD8-positive, alpha-beta T cell
3
blood cell
3
brain pericyte
3
choroid plexus epithelial cell
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
globus pallidus
3
glomerular endothelial cell
3
goblet cell
3
kidney glomerular epithelial cell
3
mast cell
3
medulla oblongata
3
mesendoderm
3
microglial cell
3
midbrain
3
muscle of leg
3
naive t cell
3
occipital lobe
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
parietal cell
3
peptic cell
3
placenta
3
plasma cell
3
plasmacytoid dendritic cell
3
pons
3
renal cortical epithelial cell
3
renal pelvis
3
schwann cell
3
sigmoid colon
3
skin of body
3
smooth muscle cell of the coronary artery
3
superior temporal gyrus
3
thyroid follicular cell
3
thyroid gland
3
transverse colon
3
trophoblast cell
3
uterus
2
hindlimb muscle
2
muscle of leg
2
A549
2
Adaptive / Maladaptive / Repairing Fibroblast
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
2
Afferent / Efferent Arteriole Endothelial Cell
2
B Cell
2
BJAB cell
2
Classical Dendritic Cell
2
Connecting Tubule Cell
2
Connecting Tubule Intercalated Cell Type A
2
Connecting Tubule Principal Cell
2
Cortical Thick Ascending Limb Cell
2
Cycling Endothelial Cell
2
Cycling Epithelial Cell
Date released
2
June, 2020
1
March, 2020
1
May, 2021
Software used
2
macs
1
abc
1
nospecificsoft_customcode
Lab
3
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
4
AMP
RFA
4
AMP
software_used.software.name!
r
annotation_type_category!
ChIP-seq
Showing 4 of 4 results
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Download
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR515IEQ
released
Annotation file set
: Accessible chromatin annotation for Lung AG04450 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP