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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
accessible chromatin
1
binding sites
1
histone modifications
Annotation Category
3
cis-regulatory elements
2
Target gene links
Annotation type Category
2
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
4
in vitro differentiated cells
1
stem cell
Biosample term
116
monocyte
58
HeLa-S3
48
CD8-positive, alpha-beta T cell
42
H1-hESC
32
fibroblast
32
islet of Langerhans
31
endothelial cell
31
neural progenitor cell
30
macrophage
29
K562
29
liver
28
common myeloid progenitor, CD34-positive
27
retina
26
A549
26
B cell
23
CD14-positive monocyte
23
hepatocyte
22
hematopoietic multipotent progenitor cell
20
adipocyte
20
breast cancer cell
20
kidney
20
pericyte cell
20
pigmented layer of retina
20
stomach
19
HFFc6
19
heart left ventricle
19
smooth muscle cell
19
spleen
17
adipose tissue
17
adrenal gland
17
embryonic stem cell
17
keratinocyte
17
pancreas
17
tibial nerve
16
MCF-7
16
endothelial cell of hepatic sinusoid
16
subcutaneous adipose tissue
15
CD4-positive, alpha-beta T cell
15
EndoC_BH1
15
HepG2
15
T cell
15
caudate nucleus
15
coronary artery
15
endothelial cell of umbilical vein
15
foreskin fibroblast
15
pancreatic ductal cell
14
CD4-positive, alpha-beta memory T cell
14
GM12878
14
natural killer cell
14
regulatory T cell
14
retinal pigment epithelial cell
13
body of pancreas
13
foreskin keratinocyte
13
tibial artery
12
astrocyte
12
excitatory neuron
12
lymphoblastoid cell line
12
mammary epithelial cell
12
neuroblastoma cell
12
osteoblast
12
pancreatic beta cell
12
putamen
12
right atrium auricular region
12
skeletal muscle myoblast
12
substantia nigra
11
erythroblast
11
heart
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
neutrophil
11
omental fat pad
11
pancreatic acinar cell
11
psoas muscle
11
sigmoid colon
10
Rhabdomyosarcoma
10
brain
10
fibroblast of lung
10
gastric cancer cell
10
mesenchymal stem cell
10
pancreatic alpha cell
10
thyroid gland
9
Ammon's horn
9
ascending aorta
9
bronchial epithelial cell
9
cardiac muscle cell
9
diffuse intrinsic pontine glioma
9
frontal cortex
9
heart right ventricle
9
layer of hippocampus
9
liposarcoma
9
pancreatic delta cell
9
skeletal muscle satellite cell
9
transverse colon
9
upper lobe of left lung
8
B-lymphoblastoid cell line
8
CD8-positive, alpha-beta memory T cell
8
cerebellum
8
fibroblast cell line
8
gastrocnemius medialis
8
mammary gland epithelial cell
8
ovary
8
pituitary stalk
8
prostate gland
8
skeletal muscle tissue
8
small intestine
7
CD4-positive helper T cell
7
H9
7
Jurkat
7
Peyer's patch
7
T-helper 1 cell
7
aorta
7
choroid plexus epithelial cell
7
esophageal adenocarcinoma
7
fibroblast of cardiac tissue
7
lymphocyte
7
mature neutrophil
7
neuronal stem cell
7
temporal lobe
7
thymus
6
22Rv1
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
GM12865
6
GM19240
6
HAP-1
6
HL-60
6
HT-29
6
HUES8
6
KARPAS-422 cell
6
LNCAP
6
MM.1S
6
PC-9
6
breast epithelium
6
chondrocyte
6
colon epithelial cell
6
epithelial cell of prostate
6
foreskin melanocyte
6
hESC cell
6
iPSC derived cell line
6
induced pluripotent stem cell
6
lung
6
mononuclear cell
6
neuroblastoma cell line
6
placenta
6
testis
6
uterus
5
cardiac fibroblast
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
BE(2)-C
5
BJ cell
5
CD14-positive, CD16-negative classical monocyte
5
CD1c-positive myeloid dendritic cell
5
CMK
5
Caco-2 cell
5
CyT49
5
Ewing sarcoma
5
GM12875
5
GM19238
5
GM19239
5
GM23248
5
HCT-116 cell
5
IMR-90
5
LoVo cell
5
MG63
5
SGBS preadipocytes
5
SK-N-MC
5
SW480
5
T-helper 17 cell
5
T-helper 2 cell
5
acute myeloid leukemia
5
amygdala
5
dermis blood vessel endothelial cell
5
enterocyte
5
esophagus muscularis mucosa
5
esophagus squamous epithelium
5
fibroblast of dermis
5
glutamatergic neuron
5
hepatic stellate cell
5
left cardiac atrium
5
midbrain
5
osteosarcoma
5
prostate cancer cell line
5
renal cortical epithelial cell
5
right lobe of liver
5
skeletal muscle fiber
5
skin fibroblast
5
smooth muscle cell of the coronary artery
5
thoracic aorta
5
type I muscle cell
4
AG04449 cell
4
AG04450 cell
4
B-lymphocyte
4
C1 segment of cervical spinal cord
4
COLO205
4
Daoy
4
GM08714
4
GM10248
4
GM10266
Life stage
embryonic
Date released
2
February, 2021
1
June, 2020
1
March, 2020
1
May, 2021
Software used
3
macs
1
abc
1
nospecificsoft_customcode
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
software_used.software.name!
r
relevant_life_stage!
embryonic
Showing 5 of 5 results
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Download
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP