Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
2
DNase-seq
Available data
2
bed bed3+
1
bed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
in vitro differentiated cells
Biosample term
62
heart
58
stomach
55
A549
51
brain
51
kidney
49
lung
48
muscle of arm
45
small intestine
43
adrenal gland
42
placenta
41
muscle of leg
39
common myeloid progenitor, CD34-positive
39
large intestine
39
left lung
39
muscle of back
33
right lung
33
thymus
31
hematopoietic multipotent progenitor cell
30
right kidney
27
CD4-positive, alpha-beta memory T cell
27
left kidney
27
renal cortex interstitium
27
renal pelvis
26
B cell
25
liver
22
spinal cord
21
CD8-positive, alpha-beta memory T cell
21
adipose tissue
20
K562
20
epithelial cell of proximal tubule
19
heart left ventricle
19
neural progenitor cell
19
spleen
18
mononuclear cell
17
glomerular endothelial cell
16
MCF-7
T-helper 1 cell
16
T-helper 17 cell
16
islet of Langerhans
16
regulatory T cell
15
monocyte
15
sigmoid colon
14
body of pancreas
14
hepatocyte
14
trophoblast cell
13
H1-hESC
13
ovary
12
CD14-positive monocyte
12
T cell
12
T-helper 2 cell
12
adipocyte
12
chorionic villus
12
endocrine pancreas
12
fibroblast of lung
12
foreskin keratinocyte
12
gastrocnemius medialis
12
heart right ventricle
12
muscle of trunk
12
psoas muscle
12
thyroid gland
11
cardiomyocytes
11
caudate nucleus
11
natural killer cell
11
tibial nerve
10
HeLa-S3
10
endothelial cell
10
endothelial cell of umbilical vein
10
fibroblast of dermis
10
layer of hippocampus
10
transverse colon
9
Peyer's patch
9
aorta
9
chorion membrane
9
endometrium adenocarcinoma
9
extended pluripotent stem (EPS) cells
9
fibroblast of cardiac tissue
9
immortal human breast epithelial cell line cell
9
induced pluripotent stem cell
9
left cardiac atrium
9
mammary gland epithelial cell
9
naive T cell
9
neurosphere
9
pancreatic ductal cell
9
skeletal muscle tissue
9
temporal lobe
9
testis
8
EndoC_BH1
8
angular gyrus
8
ascending aorta
8
cerebellum
8
coronary artery
8
foreskin fibroblast
8
frontal cortex
8
glomerular visceral epithelial cell
8
mesenchymal stem cell
8
omental fat pad
8
progenitor cell of endocrine pancreas
8
retina
8
upper lobe of left lung
7
SK-N-SH
7
cingulate gyrus
7
colonic mucosa
7
duodenal mucosa
7
keratinocyte
7
kidney loop of Henle thin ascending limb epithelial cell
7
kidney tubule cell
7
mature neutrophil
7
mucosa of rectum
7
pancreas
7
skeletal muscle myoblast
7
tibial artery
6
22Rv1
6
Brodmann (1909) area 46
6
LNCaP clone FGC
6
NAMALWA cell
6
SK-N-DZ
6
T47D
6
breast epithelium
6
bronchial epithelial cell
6
dermis blood vessel endothelial cell
6
dermis lymphatic vessel endothelial cell
6
embryonic stem cell
6
endodermal cell
6
epithelial cell of prostate
6
esophagus
6
esophagus muscularis mucosa
6
esophagus squamous epithelium
6
eye
6
fibroblast of breast
6
kidney interstitial cell
6
left renal cortex interstitium
6
left renal pelvis
6
limb
6
lower leg skin
6
muscle cell
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
neutrophil
6
osteoblast
6
pancreatic acinar cell
6
pancreatic alpha cell
6
pancreatic beta cell
6
pancreatic delta cell
6
parathyroid adenoma
6
prostate gland
6
right atrium auricular region
6
thoracic aorta
6
trophoblast
5
CD14-positive, CD16-negative classical monocyte
5
GM12878
5
HepG2
5
alternatively activated macrophage
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
mesangial cell
5
pancreatic stellate cell
5
right renal pelvis
5
skeletal muscle satellite cell
5
stomach smooth muscle
5
substantia nigra
5
tongue
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
Ammon's horn
4
BE(2)-C
4
BJ cell
4
CD8-positive, alpha-beta T cell
4
Caco-2 cell
4
GM06990
4
GM08714
4
GM12864
4
GM12865
4
GM12875
4
GM12891
4
GM12892
4
GM19238
4
GM19239
4
GM19240
4
HEK293
4
HL-60
4
IMR-90
4
KARPAS-422 cell
4
NB4
4
NT2-D1 cell
4
SK-N-MC
4
WERI-Rb-1
4
astrocyte
4
bone tissue
4
cardiac muscle cell
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
4
choroid plexus epithelial cell
4
erythroblast
4
fibroblast of mammary gland
4
fibroblast of pulmonary artery
4
fibroblast of villous mesenchyme
Life stage
3
embryonic
Date released
3
September, 2022
Software used
3
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
1
nospecificsoft_customcode
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
biosample_term_name!
T-helper 1 cell
Showing 3 of 3 results
table-tab-icon
matrix-icon
Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP