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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
chromatin state
1
accessible chromatin
1
binding sites
1
histone modifications
Annotation Category
5
cis-regulatory elements
Annotation type Category
4
ChIP-seq
1
DNase-seq
Available data
3
bed bed3+
2
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
4
in vitro differentiated cells
1
cell line
Biosample term
105
monocyte
34
CD8-positive, alpha-beta T cell
34
neural progenitor cell
29
kidney
28
heart
28
retina
24
brain
23
stomach
22
A549
20
breast cancer cell
20
fibroblast
20
pigmented layer of retina
18
endothelial cell
18
placenta
16
embryonic stem cell
16
muscle of arm
16
muscle of leg
16
small intestine
15
B cell
15
adrenal gland
15
hepatocyte
15
lung
14
adipocyte
14
large intestine
14
liver
14
macrophage
13
muscle of back
13
retinal pigment epithelial cell
12
common myeloid progenitor, CD34-positive
12
excitatory neuron
12
hematopoietic multipotent progenitor cell
12
left lung
12
neuroblastoma cell
12
thymus
11
HepG2
11
K562
11
MCF-7
11
T cell
11
endothelial cell of hepatic sinusoid
11
keratinocyte
11
right lung
11
spinal cord
10
EndoC_BH1
10
Rhabdomyosarcoma
10
gastric cancer cell
10
heart left ventricle
10
osteoblast
10
pancreatic ductal cell
9
CD4-positive, alpha-beta memory T cell
9
adipose tissue
9
astrocyte
9
diffuse intrinsic pontine glioma
9
liposarcoma
9
pancreas
9
pericyte cell
9
renal pelvis
9
smooth muscle cell
8
cardiac muscle cell
8
pancreatic beta cell
8
renal cortex interstitium
8
right kidney
8
spleen
7
B-lymphoblastoid cell line
7
CD8-positive, alpha-beta memory T cell
7
T-cell acute lymphoblastic leukemia
7
acute myeloid leukemia
7
chondrocyte
7
endothelial cell of umbilical vein
7
erythroblast
7
esophageal adenocarcinoma
7
fibroblast cell line
7
fibroblast of cardiac tissue
7
foreskin fibroblast
7
islet of Langerhans
7
left kidney
7
mature neutrophil
7
pancreatic acinar cell
7
regulatory T cell
6
Chondroid Chordoma
6
GM12878
6
H1-hESC
6
Rh-4 cell
6
SGBS preadipocytes
6
bronchial epithelial cell
6
caudate nucleus
6
choroid plexus epithelial cell
6
foreskin keratinocyte
6
hESC cell
6
left cardiac atrium
6
mammary epithelial cell
6
mammary gland epithelial cell
6
natural killer cell
6
neuroblastoma cell line
6
neuronal stem cell
6
prostate gland
6
skeletal muscle myoblast
6
skeletal muscle satellite cell
6
tibial artery
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
BE(2)-C
5
BJ cell
5
CD14-positive, CD16-negative classical monocyte
5
Caco-2 cell
5
Ewing sarcoma
5
GM06990
5
GM12864
5
GM12865
5
GM19240
5
HEK293
5
HL-60
5
IMR-90
5
Jurkat
5
KARPAS-422 cell
5
NAMALWA cell
5
NT2-D1 cell
5
RS4-11 cell
5
SK-N-MC
5
Th1 cell
5
coronary artery
5
epithelial cell of prostate
5
hepatic stellate cell
5
lymphoblastoid cell line
5
mesenchymal stem cell
5
osteosarcoma
5
prostate cancer cell line
5
temporal lobe
5
tibial nerve
5
upper lobe of left lung
4
22Rv1
4
B-lymphocyte
4
CD14-positive monocyte
4
CD1c-positive myeloid dendritic cell
4
CD4-positive, alpha-beta T cell
4
CMK
4
COLO205
4
GM12875
4
GM12891
4
GM12892
4
GM19238
4
GM19239
4
GM23248
4
HAC cell
4
HAP-1
4
HBMEC cell
4
HCT-116 cell
4
HS-SY-2 cell
4
HT-29
4
HeLa-S3
4
HuH-7
4
LHCN-M2
4
LoVo cell
4
MG63
4
MM.1S
4
Mantle cell lymphoma
4
NHEK
4
Normal Human Astrocytes
4
OCI-LY7
4
PANC-1 cell
4
PC-3
4
PC-9
4
Peyer's patch
4
RPMI8226
4
RWPE1
4
SAEC
4
SK-N-DZ
4
SK-N-SH_RA
4
SW480
4
T-47D cell
4
T-helper 1 cell
4
U-266 cell
4
U2OS
4
WERI-Rb-1
4
WI-38 cell
4
acute myeloid leukemia cell
4
adipose-derived stem cell
4
aorta
4
aortic endothelial cell
4
ascending aorta
4
diffuse large B-cell lymphoma
4
endodermal cell
4
erythroid cell
4
esophageal squamous cell carcinoma
4
fibroblast of lung
4
fibroblast of villous mesenchyme
4
mononuclear cell
4
pancreatic alpha cell
4
pancreatic delta cell
4
pulmonary artery endothelial cell
4
putamen
4
sigmoid colon
4
squamous cell lung carcinoma
4
synovial sarcoma cell
4
testis
4
thyroid gland
4
tracheal epithelial cell
4
triple-negative breast cancer
Disease term
1
prostate cancer
Organ
1
prostate gland
Life stage
1
adult
1
embryonic
Date released
2
February, 2021
2
September, 2022
1
June, 2020
Software used
4
r
3
macs
2
chromhmm
2
encode-ccres
1
abc
1
nospecificsoft_customcode
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
Showing 5 of 5 results
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Download
FileSet
DSR823DZO
released
Annotation file set
: Chromatin states for BSS00157 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP