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Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
Annotation Category
15
Gene expression levels
6
Genetic variant effects
3
Target gene links
2
cis-regulatory elements
Annotation type Category
2
ATAC-seq
Available data
2
bed bed3+
2
bigWig
File set status
2
released
Genome assembly (visualization)
2
hg19
Biosample type
2
primary cell
Biosample term
59
stomach
58
heart
49
lung
49
muscle of arm
47
brain
45
kidney
44
small intestine
42
adrenal gland
42
muscle of leg
41
muscle of back
40
A549
40
common myeloid progenitor, CD34-positive
40
large intestine
40
placenta
39
left lung
33
right lung
31
right kidney
31
thymus
29
hematopoietic multipotent progenitor cell
29
renal cortex interstitium
28
renal pelvis
27
left kidney
25
B cell
23
CD4-positive, alpha-beta memory T cell
22
liver
22
spinal cord
21
spleen
19
heart left ventricle
15
CD8-positive, alpha-beta memory T cell
15
K562
15
MCF-7
15
foreskin keratinocyte
15
sigmoid colon
14
trophoblast cell
13
adipose tissue
13
endothelial cell of umbilical vein
13
mononuclear cell
12
CD14-positive monocyte
12
body of pancreas
12
chorionic villus
12
fibroblast of lung
12
gastrocnemius medialis
12
muscle of trunk
12
ovary
12
thyroid gland
12
transverse colon
11
CD4-positive, alpha-beta T cell
11
T-helper 1 cell
11
endocrine pancreas
11
foreskin fibroblast
11
heart right ventricle
11
natural killer cell
11
psoas muscle
10
CD8-positive, alpha-beta T cell
10
Peyer's patch
10
T-helper 17 cell
10
T-helper 2 cell
10
adipocyte
10
layer of hippocampus
10
neurosphere
10
regulatory T cell
10
temporal lobe
10
testis
10
tibial nerve
10
upper lobe of left lung
9
HeLa-S3
9
T cell
9
caudate nucleus
9
left renal cortex interstitium
9
neural progenitor cell
9
retina
9
skeletal muscle myoblast
9
skeletal muscle tissue
8
H9
8
angular gyrus
8
aorta
8
cardiac muscle cell
8
dermis blood vessel endothelial cell
8
esophagus squamous epithelium
8
fibroblast of dermis
8
left cardiac atrium
8
left renal pelvis
8
lower leg skin
8
pancreas
8
right renal cortex interstitium
8
right renal pelvis
8
substantia nigra
7
SK-N-SH
7
ascending aorta
7
breast epithelium
7
cingulate gyrus
7
colonic mucosa
7
duodenal mucosa
7
esophagus muscularis mucosa
7
mature neutrophil
7
mesenchymal stem cell
7
mucosa of rectum
7
omental fat pad
7
parathyroid adenoma
7
stomach smooth muscle
7
thoracic aorta
6
22Rv1
6
HepG2
6
SK-N-DZ
6
WI38
6
bronchial epithelial cell
6
chorion membrane
6
coronary artery
6
endodermal cell
6
endometrium adenocarcinoma
6
epithelial cell of prostate
6
esophagus
6
eye
6
fibroblast of breast
6
fibroblast of cardiac tissue
6
gastroesophageal sphincter
6
immortal human breast epithelial cell line cell
6
islet of Langerhans
6
keratinocyte
6
mammary gland epithelial cell
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
naive T cell
6
neutrophil
6
prostate gland
6
subcutaneous abdominal adipose tissue
6
tibial artery
6
tongue
6
trophoblast
6
vagina
5
CD14-positive, CD16-negative classical monocyte
5
GM12878
5
HEK293
5
LNCaP clone FGC
5
T47D
5
cerebellum
5
embryonic stem cell
5
foreskin melanocyte
5
hepatocyte
5
kidney tubule cell
5
limb
5
mammary epithelial cell
5
mesodermal cell
5
right atrium auricular region
5
right cardiac atrium
5
urinary bladder
4
Brodmann (1909) area 46
4
GM06990
4
GM08714
4
GM12864
4
GM12865
4
GM12875
4
H1-hESC
4
HL-60
4
IMR-90
4
NAMALWA cell
4
NB4
4
SK-N-MC
4
T-cell
4
WERI-Rb-1
4
alternatively activated macrophage
4
cardiac fibroblast
4
choroid plexus epithelial cell
4
dermis lymphatic vessel endothelial cell
4
epithelial cell of proximal tubule
4
erythroblast
4
fibroblast of mammary gland
4
fibroblast of pulmonary artery
4
fibroblast of villous mesenchyme
4
frontal cortex
4
germinal matrix
4
lung microvascular endothelial cell
4
muscle cell
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
neural cell
4
osteoblast
4
peripheral blood mononuclear cell
4
retinal pigment epithelial cell
4
skeletal muscle satellite cell
4
skin fibroblast
4
uterus
3
A172
3
A673
3
ACC112
3
ACHN
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
Ammon's horn
3
BE(2)-C
3
BJ cell
3
C4-2B
3
CD1c-positive myeloid dendritic cell
3
CMK
3
Caco-2 cell
3
Caki2
3
DND-41
Date released
2
May, 2020
Software used
macs
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
software_used.software.name!
macs
Showing 2 of 2 results
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Download
FileSet
DSR157QFX
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of normal monocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR125CHQ
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of LPS-stimulated monocyte
Lab:
AMP-T2D consortium
Project:
AMP