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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
15
gene expression
5
accessible chromatin
3
target gene predictions
2
hQTL
2
histone modifications
1
binding sites
1
eQTL
1
meQTL
1
sQTL
Annotation Category
5
cis-regulatory elements
3
Target gene links
Annotation type Category
3
ATAC-seq
3
DNase-seq
2
snATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
8
bed bed3+
3
bigWig
File set status
8
released
Genome assembly (visualization)
21
hg19
GRCh38
Organism
6
Homo sapiens
Biosample type
7
primary cell
1
cell line
Biosample term
25
retina
24
stomach
22
heart
20
A549
20
pigmented layer of retina
19
CD14-positive monocyte
18
adrenal gland
18
small intestine
17
brain
17
lung
16
muscle of arm
16
placenta
15
B cell
15
kidney
15
large intestine
15
muscle of leg
15
thymus
14
common myeloid progenitor, CD34-positive
13
left lung
13
muscle of back
12
liver
12
right lung
11
adipocyte
11
hematopoietic multipotent progenitor cell
10
adipose tissue
10
pituitary stalk
10
renal pelvis
10
right kidney
10
spinal cord
9
CD4-positive, alpha-beta memory T cell
9
left kidney
9
natural killer cell
9
psoas muscle
9
regulatory T cell
9
renal cortex interstitium
9
spleen
8
CD8-positive, alpha-beta T cell
8
EndoC_BH1
8
K562
8
monocyte
8
retinal pigment epithelial cell
8
sigmoid colon
8
trophoblast cell
7
CD8-positive, alpha-beta memory T cell
7
MCF-7
7
embryonic stem cell
7
heart left ventricle
7
mesenchymal stem cell
7
ovary
7
pancreas
7
pancreatic alpha cell
7
pancreatic beta cell
7
pancreatic delta cell
6
SGBS preadipocytes
6
T cell
6
T-helper 1 cell
6
dendritic cell
6
gastrocnemius medialis
6
macrophage
6
mononuclear cell
6
thyroid gland
6
transverse colon
5
T-helper 17 cell
5
T-helper 2 cell
5
body of pancreas
5
chondrocyte
5
endothelial cell
5
endothelial cell of umbilical vein
5
fibroblast of cardiac tissue
5
foreskin keratinocyte
5
heart right ventricle
5
muscle of trunk
5
naive B cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
neural progenitor cell
5
pancreatic ductal cell
5
skeletal muscle myoblast
4
HeLa-S3
4
HepG2
4
Peyer's patch
4
aorta
4
breast epithelium
4
caudate nucleus
4
chorion membrane
4
chorionic villus
4
endocrine pancreas
4
epithelial cell of prostate
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin fibroblast
4
glutamatergic neuron
4
hepatocyte
4
mammary gland epithelial cell
4
memory B cell
4
mesendoderm
4
osteoblast
4
pancreatic acinar cell
4
skin fibroblast
4
testis
4
tibial nerve
4
trophoblast
4
upper lobe of left lung
3
Ammon's horn
3
CD4-positive helper T cell
3
GM12878
3
H1-hESC
3
H7-hESC
3
HAP-1
3
HT-29
3
IMR-90
3
Jurkat
3
KARPAS-422 cell
3
LoVo cell
3
MM.1S
3
NAMALWA cell
3
OCI-LY7
3
PC-9
3
SK-N-DZ
3
SK-N-SH
3
U937
3
activated CD4-positive, alpha-beta T cell
3
bipolar neuron
3
bronchial epithelial cell
3
cardiomyocytes (cardiac muscle cell)
3
coronary artery
3
endometrium adenocarcinoma
3
esophagus
3
esophagus muscularis mucosa
3
esophagus squamous epithelium
3
eye
3
frontal cortex
3
glomerular visceral epithelial cell
3
immortal human breast epithelial cell line cell
3
islet of Langerhans
3
keratinocyte
3
kidney tubule cell
3
layer of hippocampus
3
limb
3
megakaryocyte
3
naive T cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
neurosphere
3
neutrophil
3
pancreatic polypeptide-secreting cell
3
pancreatic stellate cell
3
plasmacytoid dendritic cell
3
prostate gland
3
right atrium auricular region
3
skeletal muscle satellite cell
3
skeletal muscle tissue
3
smooth muscle cell
3
tibial artery
3
tongue
3
urinary bladder
3
uterus
2
22Rv1
2
A172
2
A673
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
BE(2)-C
2
BJ cell
2
BJAB cell
2
Brodmann (1909) area 46
2
CD1c-positive myeloid dendritic cell
2
CD4-positive, alpha-beta T cell
2
CMK
2
Caco-2 cell
2
Caki2
2
Daoy
2
GM03348
2
GM04503
2
GM04504
2
GM06990
2
GM10248
2
GM10266
2
GM12864
2
GM12865
2
GM18507
2
GM19240
2
GM23248
2
H4
2
H9
2
HCT-116 cell
2
HEK293
2
HL-60
2
HUES6
2
HuH-7
2
KBM-7
2
L1-S8
2
L1-S8R
2
LHCN-M2
2
LNCAP
2
LNCaP clone FGC
2
M059J
Date released
3
May, 2020
2
January, 2021
2
June, 2020
1
May, 2021
Software used
3
macs
1
abc
1
chicago
1
cicero
Lab
5
AMP-T2D consortium
2
Kyle Gaulton, UCSD
1
Jesse Engreitz, Stanford University
Project
6
AMP
2
T1D
RFA
6
AMP
2
T1D
assembly!
GRCh38
Showing 8 of 8 results
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Download
FileSet
DSR303OXY
released
Annotation file set
: enhancer-gene predicton of THP-1_monocyte-VanBortle2017 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR505TCS
released
Annotation file set
: Accessible chromatin annotation for Blood Monocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR669PBL
released
Annotation file set
: Accessible chromatin annotation for Blood Monocytes-CD14+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR158NKH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of classical_monocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR234HXR
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of classical_monocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR499JJX
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of monocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR157QFX
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of normal monocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR125CHQ
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of LPS-stimulated monocyte
Lab:
AMP-T2D consortium
Project:
AMP