Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
26
gene expression
17
eQTL
4
accessible chromatin
4
target gene predictions
3
chromatin state
3
sQTL
2
Fine-mapped variants
2
variant to gene
1
binding sites
1
meQTL
1
variant allelic effects
Annotation Category
4
cis-regulatory elements
Annotation type Category
4
ATAC-seq
Available data
4
bed bed3+
4
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
2
Homo sapiens
Biosample type
2
primary cell
2
tissue
Biosample term
3
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
capillary endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
extracellular matrix secreting cell
2
gamma-delta T cell
2
islet of Langerhans
2
mature natural killer cell
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
monocyte
2
naive B cell
2
naive regulatory T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell
2
regulatory T cell
1
CD4-positive helper T cell
1
T cell
1
basal cell
1
ciliated cell
1
club cell
1
endothelial cell of artery
endothelial cell of lymphatic vessel
1
endothelial cell of umbilical vein
1
erythrocyte
1
immature natural killer cell
1
left renal cortex interstitium
1
macrophage
1
medulla oblongata
1
midbrain
1
myeloid dendritic cell
1
myofibroblast cell
1
neuroendocrine cell
1
pericyte cell
1
plasma cell
1
plasmacytoid dendritic cell
1
right kidney
1
right renal cortex interstitium
1
skeletal muscle myoblast
1
type I pneumocyte
1
type II pneumocyte
Organ
2
pancreas
Life stage
2
adult
Date released
4
May, 2020
Software used
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
biosample_term_name!
endothelial cell of lymphatic vessel
software_used.software.name!
macs
Showing 4 of 4 results
table-tab-icon
matrix-icon
Download
FileSet
DSR941LPG
released
Annotation file set
: Islet of Langerhans accessible chromatin annotation of overlapping ATAC-seq sites from 5 T2D samples with most significant peak selected.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR610XQN
released
Annotation file set
: Islet of Langerhans accessible chromatin annotation of overlapping ATAC-seq sites from 38 non-diabetic samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR157QFX
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of normal monocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR125CHQ
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of LPS-stimulated monocyte
Lab:
AMP-T2D consortium
Project:
AMP