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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
86
histone modifications
16
accessible chromatin
15
gene expression
4
eQTL
2
hQTL
2
target gene predictions
1
binding sites
1
meQTL
1
sQTL
Annotation Category
2
Target gene links
1
cis-regulatory elements
Annotation type Category
1
ATAC-seq
1
ChIP-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
1
snATAC-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
cell line
Biosample term
56
HeLa-S3
41
H1-hESC
25
K562
21
A549
21
heart
21
stomach
19
CD14-positive monocyte
19
HFFc6
17
adrenal gland
17
brain
17
lung
17
small intestine
16
muscle of arm
16
placenta
15
kidney
14
common myeloid progenitor, CD34-positive
14
large intestine
14
muscle of leg
14
thymus
13
left lung
13
muscle of back
11
hematopoietic multipotent progenitor cell
11
liver
11
right lung
10
GM12878
10
pericyte cell
10
pituitary stalk
10
right kidney
10
spinal cord
9
B cell
9
CD4-positive, alpha-beta memory T cell
9
MCF-7
9
adipose tissue
9
breast cancer cell
9
endothelial cell
9
keratinocyte
9
left kidney
9
neural progenitor cell
9
renal cortex interstitium
9
renal pelvis
9
spleen
8
H9
8
psoas muscle
7
CD8-positive, alpha-beta memory T cell
7
adipocyte
7
fibroblast cell line
7
foreskin fibroblast
7
heart left ventricle
7
lymphocyte
7
melanoma
7
mononuclear cell
7
sigmoid colon
7
trophoblast cell
6
HepG2
6
dendritic cell
6
endothelial cell of hepatic sinusoid
6
endothelial cell of umbilical vein
6
fibroblast
6
fibroblast of lung
6
mammary gland epithelial cell
6
olfactory receptor cell
6
ovary
6
pancreas
6
smooth muscle cell
5
HUES8
5
body of pancreas
5
cardiac muscle cell
5
fibroblast of cardiac tissue
5
fibroblast of dermis
5
foreskin keratinocyte
5
gastrocnemius medialis
5
heart right ventricle
5
hepatocyte
5
iPSC derived cell line
5
mammary epithelial cell
5
mesenchymal stem cell
5
muscle of trunk
5
natural killer cell
5
osteoblast
5
pancreatic ductal cell
5
prostate cancer cell line
5
regulatory T cell
5
thyroid gland
5
transverse colon
4
CD8-positive, alpha-beta T cell
4
CyT49
4
GM19238
4
GM19239
4
GM19240
4
IMR-90
4
Jurkat
4
SK-N-SH
4
T cell
4
aorta
4
astrocyte
4
bronchial epithelial cell
4
chorionic villus
4
colon epithelial cell
4
embryonic stem cell
4
endocrine pancreas
4
epithelial cell of prostate
4
glioblastoma multiforme cancer stem cell
4
layer of hippocampus
4
macrophage
4
mesendoderm
4
neuroblastoma cell
4
neuronal stem cell
4
pancreatic delta cell
4
prostate gland
4
retina
4
skeletal muscle myoblast
4
skin fibroblast
4
trophoblast
3
22Rv1
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
BE(2)-C
3
BJ cell
3
BJAB cell
3
Caco-2 cell
3
GM06990
3
GM08714
3
GM12864
3
GM12865
3
GM12875
3
GM12891
3
GM12892
3
GM18505
3
GM19099
3
GM19193
3
HAP-1
3
HCT-116 cell
3
HCT116
3
HEK293
3
HL-60
3
HT-29
3
KARPAS-422 cell
3
LoVo cell
3
MCF 10A cell
3
MM.1S
3
NAMALWA cell
3
NT2-D1 cell
3
OCI-LY7
3
PC-9
3
Peyer's patch
3
SK-N-MC
3
T-cell acute lymphoblastic leukemia
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
THP-1
3
Tumor-derived cell line
3
U937
3
WERI-Rb-1
3
acute myeloid leukemia
3
breast epithelium
3
cardiomyocytes (cardiac muscle cell)
3
caudate nucleus
3
chorion membrane
3
choroid plexus epithelial cell
3
coronary artery
3
dermal fibroblast
3
dermis lymphatic vessel endothelial cell
3
diffuse intrinsic pontine glioma
3
endodermal cell
3
endometrium adenocarcinoma
3
erythroblast
3
esophagus
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
immortal human breast epithelial cell line cell
3
islet of Langerhans
3
liposarcoma
3
luminal epithelial cell of mammary gland
3
monocyte
3
myotube
3
naive T cell
3
neurosphere
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
retinal pigment epithelial cell
3
synovial sarcoma cell
3
testis
3
tibial nerve
3
triple-negative breast cancer
3
upper lobe of left lung
2
A673
2
Ammon's horn
2
B-lymphoblastoid cell line
2
Brodmann (1909) area 46
2
Burkitt's lymphoma
2
CD1c-positive myeloid dendritic cell
2
CD4-positive helper T cell
2
CMK
Date released
1
February, 2021
1
January, 2021
May, 2020
1
May, 2021
Software used
1
abc
1
cicero
1
macs
Lab
1
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
1
Kyle Gaulton, UCSD
Project
2
AMP
1
T1D
RFA
2
AMP
1
T1D
biosample_term_name!
BL-41 cell
month_released!
May, 2020
Showing 3 of 3 results
table-tab-icon
matrix-icon
Download
FileSet
DSR431VOC
released
Annotation file set
: Binding sites annotation for Blood Monocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR303OXY
released
Annotation file set
: enhancer-gene predicton of THP-1_monocyte-VanBortle2017 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR158NKH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of classical_monocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D