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Schema
Citing CMDGA
Clear Filters
Annotation type
5
accessible chromatin
3
eQTL
2
histone modifications
2
target gene predictions
1
binding sites
Annotation Category
2
Target gene links
2
cis-regulatory elements
Annotation type Category
2
ChIP-seq
1
pCHi-C
1
snATAC-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
54
HeLa-S3
39
H1-hESC
23
K562
21
heart
21
neural progenitor cell
20
stomach
19
A549
19
HFFc6
19
brain
17
lung
16
kidney
16
muscle of arm
16
placenta
16
small intestine
15
adrenal gland
14
large intestine
14
thymus
13
common myeloid progenitor, CD34-positive
13
left lung
13
muscle of back
13
muscle of leg
11
B cell
11
breast cancer cell
11
hematopoietic multipotent progenitor cell
11
liver
11
right lung
10
pericyte cell
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
gastric cancer cell
9
left kidney
9
renal cortex interstitium
9
renal pelvis
8
GM12878
8
Rhabdomyosarcoma
8
endothelial cell
8
heart left ventricle
8
lymphocyte
8
neuroblastoma cell
8
spinal cord
7
B-lymphoblastoid cell line
7
CD8-positive, alpha-beta memory T cell
7
H9
7
HepG2
7
MCF-7
7
adipose tissue
7
diffuse intrinsic pontine glioma
7
esophageal adenocarcinoma
7
hepatocyte
7
keratinocyte
7
psoas muscle
7
smooth muscle cell
7
spleen
6
Chondroid Chordoma
6
fibroblast
6
fibroblast of cardiac tissue
6
hESC cell
6
liposarcoma
6
mononuclear cell
6
natural killer cell
6
neuroblastoma cell line
6
olfactory receptor cell
6
sigmoid colon
6
squamous cell lung carcinoma
5
CyT49
5
T cell
5
T-cell acute lymphoblastic leukemia
5
foreskin keratinocyte
5
heart right ventricle
5
mammary gland epithelial cell
5
melanoma cell
5
osteosarcoma
5
ovary
5
pancreas
5
regulatory T cell
5
trophoblast cell
4
CD14-positive monocyte
4
HUES8
4
aorta
4
astrocyte
4
body of pancreas
4
bronchial epithelial cell
4
caudate nucleus
4
chorionic villus
4
colon epithelial cell
4
endocrine pancreas
4
foreskin fibroblast
4
gastrocnemius medialis
4
iPSC derived cell line
4
layer of hippocampus
4
macrophage
4
mesenchymal stem cell
4
monocyte
4
muscle of trunk
4
pancreatic delta cell
4
pancreatic ductal cell
4
prostate gland
4
retina
4
rhabdomyosarcoma cell
4
skeletal muscle tissue
4
skin fibroblast
4
testis
3
22Rv1
3
CD4-positive, alpha-beta T cell
3
CD8-positive, alpha-beta T cell
3
Ewing sarcoma
3
GM18507
3
GM19238
3
GM19239
3
GM19240
3
HCT116
3
NAMALWA cell
3
Peyer's patch
3
SK-N-DZ
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
acute myeloid leukemia
3
adipocyte
3
cardiac muscle cell
3
cardiomyocytes (cardiac muscle cell)
3
cerebellum
3
chorion membrane
3
colonic mucosa
3
dermis lymphatic vessel endothelial cell
3
diffuse large B-cell lymphoma
3
embryonic stem cell
3
endodermal cell
3
endometrium adenocarcinoma
3
endothelial cell of umbilical vein
3
epithelial cell of prostate
3
esophageal squamous cell carcinoma
3
esophagus
3
fibroblast of dermis
3
fibroblast of lung
3
glioblastoma cell
3
glioma cell
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
luminal epithelial cell of mammary gland
3
lymphoblast
3
lymphoblastoid cell line
3
mammary epithelial cell
3
mesendoderm
3
naive T cell
3
neuronal stem cell
3
neurosphere
3
neutrophil
3
osteoblast
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic ductal adenocarcinoma
3
skeletal muscle myoblast
3
substantia nigra
3
thyroid gland
3
transverse colon
3
upper lobe of left lung
2
AG04449 cell
2
AG04450 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
Ammon's horn
2
B-lymphocyte
2
BE(2)-C
2
BJ cell
2
Brodmann (1909) area 46
2
CD1c-positive myeloid dendritic cell
2
CMK
2
COLO205
2
Caco-2 cell
2
EndoC_BH1
2
GM06990
2
GM12864
2
GM12865
2
GM12875
2
GM12891
2
GM12892
2
GM18505
2
GM19099
2
GM19193
2
GM23248
2
H7-hESC
2
HAP-1
2
HEK293
2
HK-2 cell
2
HL-60
2
HS-SY-2 cell
2
HT-29
2
HuH-7
2
IMR-90
2
Jurkat
2
KARPAS-422 cell
2
LHCN-M2
2
LNCaP clone FGC
2
LoVo cell
2
MG63
2
MM.1S
2
Mantle cell lymphoma
Date released
May, 2021
2
February, 2021
1
January, 2021
1
May, 2020
Software used
2
macs
1
chicago
1
cicero
Lab
3
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
3
AMP
1
T1D
RFA
3
AMP
1
T1D
biosample_term_name!
glioblastoma multiforme cancer stem cell
month_released!
May, 2021
Showing 4 of 4 results
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Download
FileSet
DSR258GDK
released
Annotation file set
: Histone modifications annotation for Blood Monocytes-CD14+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR084XKT
released
Annotation file set
: Histone modifications annotation for Blood Monocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR158NKH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of classical_monocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR499JJX
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of monocyte
Lab:
AMP-T2D consortium
Project:
AMP