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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
87
histone modifications
18
accessible chromatin
15
gene expression
4
eQTL
3
binding sites
2
hQTL
2
target gene predictions
1
candidate regulatory elements
1
chromatin state
1
meQTL
1
sQTL
Annotation Category
3
cis-regulatory elements
2
Target gene links
Annotation type Category
4
ChIP-seq
1
DNase-seq
1
pCHi-C
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
3
cell line
2
primary cell
Biosample term
55
HeLa-S3
40
H1-hESC
24
K562
21
heart
20
A549
19
HFFc6
19
stomach
17
brain
17
lung
16
muscle of arm
16
small intestine
15
adrenal gland
15
kidney
15
placenta
14
thymus
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
13
muscle of leg
11
hematopoietic multipotent progenitor cell
11
right lung
10
liver
10
right kidney
9
B cell
9
CD4-positive, alpha-beta memory T cell
9
GM12878
9
breast cancer cell
9
left kidney
9
neural progenitor cell
9
renal cortex interstitium
9
renal pelvis
9
spinal cord
8
MCF-7
8
adipose tissue
8
spleen
7
CD8-positive, alpha-beta memory T cell
7
H9
7
fibroblast cell line
7
heart left ventricle
7
lymphocyte
7
melanoma
7
mononuclear cell
7
psoas muscle
6
foreskin fibroblast
6
keratinocyte
6
olfactory receptor cell
6
sigmoid colon
5
HUES8
5
HepG2
5
endothelial cell of umbilical vein
5
fibroblast of lung
5
foreskin keratinocyte
5
heart right ventricle
5
iPSC derived cell line
5
mammary gland epithelial cell
5
ovary
5
pancreas
5
prostate cancer cell line
5
trophoblast cell
4
CD14-positive monocyte
4
CyT49
4
GM19238
4
GM19239
4
GM19240
4
T cell
4
aorta
4
body of pancreas
4
bronchial epithelial cell
4
cardiac muscle cell
4
chorionic villus
4
embryonic stem cell
4
endocrine pancreas
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
gastrocnemius medialis
4
glioblastoma multiforme cancer stem cell
4
layer of hippocampus
4
mammary epithelial cell
4
mesenchymal stem cell
4
muscle of trunk
4
neuroblastoma cell
4
osteoblast
4
prostate gland
4
regulatory T cell
4
retina
4
skeletal muscle myoblast
4
testis
4
thyroid gland
4
transverse colon
4
trophoblast
4
upper lobe of left lung
3
22Rv1
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
BE(2)-C
3
BJ cell
3
Caco-2 cell
3
GM06990
3
GM08714
3
GM12864
3
GM12865
3
GM12875
3
GM12891
3
GM12892
3
GM18505
3
GM19099
3
GM19193
3
HCT116
3
HEK293
3
HL-60
3
IMR-90
3
NAMALWA cell
3
NT2-D1 cell
3
Peyer's patch
3
SK-N-MC
3
SK-N-SH
3
T-cell acute lymphoblastic leukemia
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
Tumor-derived cell line
3
WERI-Rb-1
3
acute myeloid leukemia
3
adipocyte
3
cardiomyocytes (cardiac muscle cell)
3
caudate nucleus
3
chorion membrane
3
choroid plexus epithelial cell
3
dermal fibroblast
3
dermis lymphatic vessel endothelial cell
3
diffuse intrinsic pontine glioma
3
endodermal cell
3
endometrium adenocarcinoma
3
epithelial cell of prostate
3
erythroblast
3
esophagus
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
hepatocyte
3
immortal human breast epithelial cell line cell
3
liposarcoma
3
mesendoderm
3
naive T cell
3
natural killer cell
3
neuronal stem cell
3
neurosphere
3
neutrophil
3
retinal pigment epithelial cell
3
skeletal muscle tissue
3
skin fibroblast
3
synovial sarcoma cell
3
tibial nerve
3
triple-negative breast cancer
2
Ammon's horn
2
B-lymphoblastoid cell line
2
Brodmann (1909) area 46
2
Burkitt's lymphoma
2
CD1c-positive myeloid dendritic cell
2
CD4-positive, alpha-beta T cell
2
CMK
2
COLO-320 cell
2
DND-41 cell
2
Daoy
2
ECC-1
2
EndoC_BH1
2
Ewing sarcoma
2
Fallopian Tube Carcinoma
2
GM10248
2
GM10266
2
GM10847
2
GM12801
2
GM12872
2
GM12873
2
GM12874
2
GM15510
2
GM18507
2
GM18526
2
GM18951
2
GM23248
2
HAC cell
2
HAP-1
2
HBMEC cell
2
HCT-116 cell
2
HEK293-T-REx cell
2
HK-2 cell
2
HS-SY-2 cell
2
HT-29
2
HUES6
2
HUES64
2
HuH-7
2
Jurkat
2
KARPAS-422 cell
2
KBM-7
2
LHCN-M2
2
LNCaP clone FGC
Disease term
1
testicular embryonal carcinoma
Organ
3
gonad
3
testis
Life stage
1
unknown
Date released
2
February, 2021
1
May, 2020
1
October, 2022
1
September, 2022
Software used
2
macs
1
chicago
1
chromhmm
1
r
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
1
Kyle Gaulton, UCSD
Project
5
AMP
RFA
5
AMP
Showing 5 of 5 results
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Download
FileSet
DSR209NBR
released
Annotation file set
: Binding sites annotation for NT2-D1 cell (NT2-D1) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR598KKZ
released
Annotation file set
: Target gene predictions for BSS01386 NT2-D1 cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR556ACO
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell NT2-D1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR431VOC
released
Annotation file set
: Binding sites annotation for Blood Monocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR499JJX
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of monocyte
Lab:
AMP-T2D consortium
Project:
AMP