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Schema
Citing CMDGA
Clear Filters
Annotation type
18
accessible chromatin
3
eQTL
3
target gene predictions
2
gene expression
2
histone modifications
1
binding sites
Annotation Category
3
Genetic variant effects
3
Target gene links
Annotation type Category
3
RNA-seq
1
ATAC-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
1
snATAC-seq
Available data
3
bed bed3+
File set status
6
released
Genome assembly (visualization)
3
GRCh38
3
hg19
Organism
6
Homo sapiens
Biosample type
5
primary cell
1
cell line
Biosample term
52
HeLa-S3
39
H1-hESC
19
HFFc6
19
heart
18
brain
17
K562
17
lung
17
stomach
16
CD14-positive monocyte
16
muscle of arm
16
placenta
16
small intestine
14
large intestine
14
muscle of leg
14
thymus
13
kidney
13
left lung
13
muscle of back
12
adrenal gland
11
macrophage
11
right lung
10
pericyte cell
10
pituitary stalk
10
right kidney
9
islet of Langerhans
9
left kidney
9
renal cortex interstitium
9
renal pelvis
9
spinal cord
8
H9
8
endothelial cell
8
liver
8
smooth muscle cell
7
GM12878
7
lymphocyte
7
trophoblast cell
6
CD4-positive, alpha-beta memory T cell
6
dendritic cell
6
fibroblast
6
iPSC derived cell line
6
lymphoblastoid cell line
6
monocyte
6
olfactory receptor cell
5
CD8-positive, alpha-beta T cell
5
adipocyte
5
heart left ventricle
5
keratinocyte
5
muscle of trunk
5
neural progenitor cell
5
spleen
4
B cell
4
CyT49
4
HUES8
4
T-helper 17 cell
4
adipose tissue
4
astrocyte
4
chorionic villus
4
colon epithelial cell
4
common myeloid progenitor, CD34-positive
4
endothelial cell of umbilical vein
4
foreskin keratinocyte
4
hepatocyte
4
mesenchymal stem cell
4
neutrophil
4
ovary
4
psoas muscle
4
regulatory T cell
4
skin of body
3
CD4-positive, alpha-beta T cell
3
HepG2
3
SK-N-SH
3
T cell
3
activated CD4-positive, alpha-beta T cell
3
blood cell
3
chorion membrane
3
epithelial cell of prostate
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
fibroblast of lung
3
foreskin fibroblast
3
heart right ventricle
3
mesendoderm
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
natural killer cell
3
neurosphere
3
pancreas
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic delta cell
3
pancreatic ductal cell
3
retina
3
sigmoid colon
3
skin fibroblast
3
trophoblast
3
type B pancreatic cell
2
22Rv1
2
A673
2
BJAB cell
2
CD4-positive helper T cell
2
CD8-positive, alpha-beta memory T cell
2
GM18507
2
H7-hESC
2
HCT116
2
IMR-90
2
Jurkat
2
MCF 10A cell
2
NAMALWA cell
2
PC-9
2
Panc1
2
SK-N-DZ
2
T-cell
2
T-helper 1 cell
2
T-helper 2 cell
2
THP-1
2
U937
2
activated CD8-positive, alpha-beta T cell
2
blood vessel smooth muscle cell
2
bronchial epithelial cell
2
cardiac muscle cell
2
coronary artery
2
cortical cell of adrenal gland
2
dermis lymphatic vessel endothelial cell
2
dorsolateral prefrontal cortex
2
endodermal cell
2
enteric smooth muscle cell
2
erythroblast
2
esophagus
2
eye
2
fat cell
2
gabaergic neuron
2
glutamatergic neuron
2
iPS DF 19.11
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
luminal epithelial cell of mammary gland
2
mammary gland epithelial cell
2
megakaryocyte
2
memory B cell
2
microglial cell
2
muscle
2
naive B cell
2
osteoblast
2
pancreatic alpha cell
2
pancreatic beta cell
2
putamen
2
right renal cortex interstitium
2
right renal pelvis
2
skeletal muscle myoblast
2
skeletal muscle tissue
2
smooth muscle cell of the esophagus
2
substantia nigra
2
testis
2
thyroid gland
2
tongue
2
transverse colon
2
type I muscle cell
2
type II muscle cell
2
type II pneumocyte
2
uterus
1
A549
1
AG04449 cell
1
AG04450 cell
1
Ammon's horn
1
B cell, CD19-positive
1
B-lymphoblastoid cell line
1
BE(2)-C
1
BJ cell
1
CD1c-positive myeloid dendritic cell
1
CD56-positive, CD161-positive immature natural killer cell
1
CMK
1
CWRU1
1
DND-41
1
Daoy
1
EH
1
EL
1
ELF-1
1
ELR
1
ES-I3
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
EndoC_BH1
1
G401
1
GM03348
1
GM06990
1
GM08714
1
GM12864
1
GM12865
1
GM12891
1
GM12892
1
GM18486
1
GM18505
1
GM18508
1
GM18516
1
GM18522
1
GM19099
1
GM19141
1
GM19193
1
GM19204
Life stage
adult
Date released
3
January, 2022
1
January, 2021
1
May, 2020
1
May, 2021
Software used
3
qTLtools
1
abc
1
chicago
1
cicero
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
1
Kyle Gaulton, UCSD
Project
5
AMP
1
T1D
RFA
5
AMP
1
T1D
relevant_life_stage!
adult
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR338LAI
released
Annotation file set
: monocyte naive eQTL of studay Schmiedel_2018 from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR085HYL
released
Annotation file set
: monocyte CD16 naive eQTL of studay Schmiedel_2018 from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR583OYR
released
Annotation file set
: monocyte eQTL of studay BLUEPRINT from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR303OXY
released
Annotation file set
: enhancer-gene predicton of THP-1_monocyte-VanBortle2017 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR158NKH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of classical_monocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR499JJX
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of monocyte
Lab:
AMP-T2D consortium
Project:
AMP