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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
86
histone modifications
18
accessible chromatin
15
gene expression
5
target gene predictions
4
eQTL
2
candidate regulatory elements
2
chromatin state
2
hQTL
1
binding sites
1
meQTL
1
sQTL
Annotation Category
5
Target gene links
2
cis-regulatory elements
Annotation type Category
5
DNase-seq
4
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
1
snATAC-seq
Available data
7
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
4
in vitro differentiated cells
2
primary cell
1
cell line
Biosample term
61
stomach
60
HeLa-S3
57
heart
50
lung
49
muscle of arm
46
small intestine
45
adrenal gland
45
brain
43
kidney
41
common myeloid progenitor, CD34-positive
41
large intestine
41
muscle of back
41
muscle of leg
41
placenta
40
A549
40
H1-hESC
39
left lung
34
thymus
33
right lung
30
K562
30
right kidney
29
hematopoietic multipotent progenitor cell
29
renal cortex interstitium
28
renal pelvis
27
CD14-positive monocyte
27
left kidney
24
B cell
23
CD4-positive, alpha-beta memory T cell
23
liver
23
spleen
22
spinal cord
19
HFFc6
18
heart left ventricle
17
sigmoid colon
16
trophoblast cell
15
CD8-positive, alpha-beta memory T cell
15
H9
MCF-7
15
adipose tissue
15
foreskin keratinocyte
15
psoas muscle
14
ovary
13
body of pancreas
13
gastrocnemius medialis
13
mononuclear cell
13
muscle of trunk
13
thyroid gland
13
transverse colon
12
CD8-positive, alpha-beta T cell
12
chorionic villus
11
CD4-positive, alpha-beta T cell
11
endocrine pancreas
11
heart right ventricle
11
natural killer cell
11
pericyte cell
10
GM12878
10
Peyer's patch
10
adipocyte
10
endothelial cell of umbilical vein
10
fibroblast of lung
10
foreskin fibroblast
10
neural progenitor cell
10
neurosphere
10
pancreas
10
pituitary stalk
10
testis
10
upper lobe of left lung
9
T-helper 1 cell
9
layer of hippocampus
9
regulatory T cell
9
retina
9
skeletal muscle tissue
9
smooth muscle cell
9
tibial nerve
8
T cell
8
T-helper 17 cell
8
T-helper 2 cell
8
aorta
8
breast epithelium
8
cardiac muscle cell
8
caudate nucleus
8
dermis blood vessel endothelial cell
8
esophagus squamous epithelium
8
fibroblast of dermis
8
keratinocyte
8
left renal cortex interstitium
8
left renal pelvis
8
lower leg skin
8
lymphocyte
8
mesenchymal stem cell
8
right renal pelvis
7
SK-N-SH
7
endothelial cell
7
epithelial cell of prostate
7
esophagus
7
esophagus muscularis mucosa
7
fibroblast of cardiac tissue
7
hepatocyte
7
mammary gland epithelial cell
7
neutrophil
7
omental fat pad
7
parathyroid adenoma
7
right renal cortex interstitium
7
skeletal muscle myoblast
7
substantia nigra
7
temporal lobe
7
trophoblast
6
22Rv1
6
SK-N-DZ
6
T-cell
6
WI38
6
angular gyrus
6
ascending aorta
6
astrocyte
6
bronchial epithelial cell
6
chorion membrane
6
cingulate gyrus
6
colonic mucosa
6
coronary artery
6
dendritic cell
6
duodenal mucosa
6
endodermal cell
6
endometrium adenocarcinoma
6
eye
6
fibroblast of breast
6
gastroesophageal sphincter
6
immortal human breast epithelial cell line cell
6
mucosa of rectum
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
naive T cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
olfactory receptor cell
6
prostate gland
6
stomach smooth muscle
6
thoracic aorta
6
tongue
6
vagina
5
HCT116
5
HepG2
5
LNCaP clone FGC
5
T47D
5
cerebellum
5
colon epithelial cell
5
foreskin melanocyte
5
kidney tubule cell
5
limb
5
mesendoderm
5
mesodermal cell
5
right atrium auricular region
5
skin fibroblast
5
subcutaneous abdominal adipose tissue
5
tibial artery
5
urinary bladder
5
uterus
4
A673
4
Ammon's horn
4
Brodmann (1909) area 46
4
CyT49
4
HAP-1
4
HEK293
4
HT-29
4
HUES8
4
IMR-90
4
MM.1S
4
NAMALWA cell
4
OCI-LY7
4
PC-9
4
Panc1
4
bipolar neuron
4
dermis lymphatic vessel endothelial cell
4
fibroblast
4
frontal cortex
4
iPS DF 19.11
4
iPSC derived cell line
4
luminal epithelial cell of mammary gland
4
lung microvascular endothelial cell
4
macrophage
4
mammary epithelial cell
4
muscle cell
4
neural cell
4
osteoblast
4
pancreatic delta cell
4
peripheral blood mononuclear cell
4
right cardiac atrium
4
skeletal muscle satellite cell
3
A172
3
ACC112
3
ACHN
3
C4-2B
3
CD1c-positive myeloid dendritic cell
3
CMK
3
Caki2
3
DND-41
3
DOHH2
3
Daoy
3
EH
3
EL
3
ELF-1
Life stage
4
adult
Date released
4
September, 2022
1
January, 2021
1
May, 2020
1
May, 2021
Software used
4
r
1
abc
1
chicago
1
cicero
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
1
Kyle Gaulton, UCSD
Project
6
AMP
1
T1D
RFA
6
AMP
1
T1D
biosample_term_name!
MCF-7
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR552UYW
released
Annotation file set
: Candidate regulatory elements for BSS01344 muscle cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR232PMO
released
Annotation file set
: Candidate regulatory elements for BSS01338 muscle cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR993YSZ
released
Annotation file set
: Target gene predictions for BSS01344 muscle cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR477QCE
released
Annotation file set
: Target gene predictions for BSS01338 muscle cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR303OXY
released
Annotation file set
: enhancer-gene predicton of THP-1_monocyte-VanBortle2017 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR158NKH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of classical_monocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR499JJX
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of monocyte
Lab:
AMP-T2D consortium
Project:
AMP