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Schema
Citing CMDGA
Clear Filters
Annotation type
86
histone modifications
18
accessible chromatin
15
gene expression
4
eQTL
2
hQTL
2
target gene predictions
1
binding sites
1
meQTL
1
sQTL
Annotation Category
2
Target gene links
1
cis-regulatory elements
Annotation type Category
1
ATAC-seq
1
ChIP-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
pCHi-C
1
snATAC-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
cell line
Biosample term
56
HeLa-S3
41
H1-hESC
25
K562
21
A549
21
heart
21
stomach
19
CD14-positive monocyte
19
HFFc6
17
brain
16
adrenal gland
16
lung
16
muscle of arm
16
placenta
16
small intestine
15
kidney
14
common myeloid progenitor, CD34-positive
14
large intestine
14
muscle of leg
13
left lung
13
muscle of back
13
thymus
11
hematopoietic multipotent progenitor cell
11
right lung
10
GM12878
10
liver
10
pericyte cell
10
pituitary stalk
10
right kidney
10
spinal cord
9
B cell
9
CD4-positive, alpha-beta memory T cell
9
MCF-7
9
breast cancer cell
9
endothelial cell
9
keratinocyte
9
left kidney
9
renal cortex interstitium
9
renal pelvis
8
H9
8
adipose tissue
8
neural progenitor cell
8
spleen
7
CD8-positive, alpha-beta memory T cell
7
adipocyte
7
foreskin fibroblast
7
lymphocyte
7
melanoma
7
mononuclear cell
7
psoas muscle
7
trophoblast cell
6
dendritic cell
6
endothelial cell of hepatic sinusoid
6
endothelial cell of umbilical vein
6
fibroblast
6
fibroblast cell line
6
fibroblast of lung
6
heart left ventricle
6
mammary gland epithelial cell
6
olfactory receptor cell
6
sigmoid colon
6
smooth muscle cell
5
HUES8
5
HepG2
5
body of pancreas
5
cardiac muscle cell
5
fibroblast of cardiac tissue
5
fibroblast of dermis
5
foreskin keratinocyte
5
gastrocnemius medialis
5
hepatocyte
5
iPSC derived cell line
5
mammary epithelial cell
5
muscle of trunk
5
natural killer cell
5
osteoblast
5
ovary
5
pancreas
5
pancreatic ductal cell
5
prostate cancer cell line
5
regulatory T cell
5
skeletal muscle myoblast
5
thyroid gland
5
transverse colon
4
CD8-positive, alpha-beta T cell
4
CyT49
4
GM19238
4
GM19239
4
GM19240
4
IMR-90
4
Jurkat
4
SK-N-SH
4
T cell
4
astrocyte
4
bronchial epithelial cell
4
chorionic villus
4
colon epithelial cell
4
endocrine pancreas
4
epithelial cell of prostate
4
glioblastoma multiforme cancer stem cell
4
heart right ventricle
4
layer of hippocampus
4
macrophage
4
mesenchymal stem cell
4
neuroblastoma cell
4
neuronal stem cell
4
pancreatic delta cell
4
prostate gland
4
retina
4
skin fibroblast
4
upper lobe of left lung
3
22Rv1
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
BE(2)-C
3
BJ cell
3
BJAB cell
3
Caco-2 cell
3
GM06990
3
GM08714
3
GM12864
3
GM12865
3
GM12875
3
GM12891
3
GM12892
3
GM18505
3
GM19099
3
GM19193
3
HAP-1
3
HCT-116 cell
3
HCT116
3
HEK293
3
HL-60
3
HT-29
3
KARPAS-422 cell
3
LoVo cell
3
MCF 10A cell
3
MM.1S
3
NAMALWA cell
3
NT2-D1 cell
3
OCI-LY7
3
PC-9
3
Peyer's patch
3
SK-N-MC
3
T-cell acute lymphoblastic leukemia
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
THP-1
3
Tumor-derived cell line
3
U937
3
WERI-Rb-1
3
acute myeloid leukemia
3
aorta
3
breast epithelium
3
caudate nucleus
3
chorion membrane
3
choroid plexus epithelial cell
3
coronary artery
3
dermal fibroblast
dermis lymphatic vessel endothelial cell
3
diffuse intrinsic pontine glioma
3
embryonic stem cell
3
endodermal cell
3
endometrium adenocarcinoma
3
erythroblast
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
immortal human breast epithelial cell line cell
3
liposarcoma
3
luminal epithelial cell of mammary gland
3
mesendoderm
3
monocyte
3
myotube
3
naive T cell
3
neurosphere
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
retinal pigment epithelial cell
3
synovial sarcoma cell
3
testis
3
tibial nerve
3
triple-negative breast cancer
3
trophoblast
2
A673
2
Brodmann (1909) area 46
2
Burkitt's lymphoma
2
CD1c-positive myeloid dendritic cell
2
CD4-positive helper T cell
2
CMK
2
COLO-320 cell
2
DND-41 cell
2
Daoy
2
ECC-1
2
EndoC_BH1
Date released
1
February, 2021
1
January, 2021
1
May, 2021
Software used
1
abc
1
cicero
1
macs
Lab
1
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
1
Kyle Gaulton, UCSD
Project
2
AMP
1
T1D
RFA
2
AMP
1
T1D
biosample_term_name!
dermis lymphatic vessel endothelial cell
annotation_type_category!
pCHi-C
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR431VOC
released
Annotation file set
: Binding sites annotation for Blood Monocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR303OXY
released
Annotation file set
: enhancer-gene predicton of THP-1_monocyte-VanBortle2017 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR158NKH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of classical_monocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D