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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
88
histone modifications
19
accessible chromatin
15
gene expression
6
candidate regulatory elements
4
binding sites
4
eQTL
2
hQTL
2
target gene predictions
1
chromatin state
1
meQTL
1
sQTL
1
variant allelic effects
Annotation Category
2
Target gene links
1
Genetic variant effects
Annotation type Category
2
DNase-seq
1
ChIP-seq
1
pCHi-C
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
in vitro differentiated cells
Biosample term
54
HeLa-S3
38
H1-hESC
22
K562
22
heart
19
HFFc6
19
stomach
18
A549
17
brain
17
lung
17
muscle of arm
16
small intestine
15
adrenal gland
15
kidney
14
placenta
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
13
muscle of leg
13
thymus
11
right kidney
11
right lung
10
hematopoietic multipotent progenitor cell
10
renal cortex interstitium
10
renal pelvis
9
B cell
9
CD4-positive, alpha-beta memory T cell
9
heart left ventricle
9
left kidney
9
liver
8
adipose tissue
7
CD8-positive, alpha-beta memory T cell
7
GM12878
7
H9
7
lymphocyte
7
psoas muscle
7
spinal cord
7
spleen
6
heart right ventricle
6
mononuclear cell
6
olfactory receptor cell
6
sigmoid colon
5
MCF-7
5
body of pancreas
5
neural progenitor cell
5
ovary
5
pancreas
5
tibial nerve
5
trophoblast cell
4
CD14-positive monocyte
4
CyT49
4
HUES8
4
T cell
4
aorta
4
cardiomyocytes (cardiac muscle cell)
4
caudate nucleus
4
chorionic villus
4
coronary artery
4
endocrine pancreas
4
endothelial cell of umbilical vein
4
foreskin keratinocyte
4
gastrocnemius medialis
4
iPSC derived cell line
4
muscle of trunk
4
retina
4
right atrium auricular region
4
thyroid gland
4
tibial artery
4
transverse colon
3
HCT116
3
Peyer's patch
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
ascending aorta
3
chorion membrane
3
endometrium adenocarcinoma
3
esophagus
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
fibroblast of lung
3
frontal cortex
3
hepatocyte
3
immortal human breast epithelial cell line cell
3
layer of hippocampus
3
left renal cortex interstitium
3
left renal pelvis
3
mammary gland epithelial cell
3
mesenchymal stem cell
3
naive T cell
3
natural killer cell
3
neurosphere
3
neutrophil
3
regulatory T cell
3
right renal cortex interstitium
3
right renal pelvis
3
skeletal muscle myoblast
3
skeletal muscle tissue
3
testis
3
thoracic aorta
3
trophoblast
3
upper lobe of left lung
2
cardiac fibroblast
2
muscle of leg
2
22Rv1
2
Ammon's horn
2
Brodmann (1909) area 46
2
CD4-positive, alpha-beta T cell
2
EndoC_BH1
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
HepG2
2
LNCaP clone FGC
2
MIN6
2
NAMALWA cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SK-N-DZ
2
SK-N-SH
2
T47D
2
adipocyte
2
angular gyrus
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
breast epithelium
2
bronchial epithelial cell
2
cardiac muscle cell
2
cardiac precursors (cardiac muscle cell)
2
cerebellum
2
choroid plexus epithelial cell
2
cingulate gyrus
2
colonic mucosa
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
duodenal mucosa
2
endodermal cell
2
epithelial cell of prostate
2
epithelial cell of proximal tubule
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
fibroblast of breast
2
foreskin fibroblast
2
globus pallidus
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
hepatic stellate cell
2
islet of Langerhans
2
keratinocyte
2
kidney capillary endothelial cell
2
kidney epithelial cell
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
left cardiac atrium
2
limb
2
lower leg skin
2
lymphocyte of B lineage (iPSC)
2
medulla oblongata
2
mesendoderm
2
midbrain
2
middle frontal gyrus
2
mucosa of rectum
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
occipital lobe
2
omental fat pad
2
parathyroid adenoma
2
pons
2
prostate gland
2
putamen
2
renal cortical epithelial cell
2
right cardiac atrium
2
skeletal muscle cell
2
skin fibroblast
2
smooth muscle cell of the brain vasculature
2
stomach smooth muscle
2
substantia nigra
2
superior temporal gyrus
2
temporal lobe
2
tongue
2
urinary bladder
2
vagina
1
brain microvascular endothelial cell
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
8988T
1
A172
1
A673
1
ACC112
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08395 cell
1
AG08396 cell
1
AG09309 cell
Life stage
1
embryonic
Date released
2
May, 2020
1
September, 2022
Software used
1
chicago
1
deltasvm
1
r
Lab
3
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
1
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Project
3
AMP
RFA
3
AMP
Showing 3 of 3 results
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Download
FileSet
DSR676XKI
released
Annotation file set
: Target gene predictions for BSS00171 cardiac muscle cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR499JJX
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of monocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR562MNO
released
Annotation file set
: Genetic variants with deltaSVM predictions in heart cardiac muscle cell DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP