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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
86
histone modifications
19
accessible chromatin
15
gene expression
5
target gene predictions
4
eQTL
2
candidate regulatory elements
2
chromatin state
2
hQTL
1
binding sites
1
meQTL
1
sQTL
Annotation Category
5
Target gene links
Annotation type Category
3
DNase-seq
2
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
1
snATAC-seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
2
primary cell
2
tissue
1
cell line
Biosample term
55
HeLa-S3
39
H1-hESC
23
K562
21
stomach
20
heart
19
A549
19
HFFc6
18
CD14-positive monocyte
17
adrenal gland
17
lung
17
small intestine
16
brain
16
muscle of arm
15
placenta
14
kidney
14
large intestine
14
muscle of leg
14
thymus
13
left lung
13
muscle of back
11
common myeloid progenitor, CD34-positive
11
right lung
10
liver
10
pituitary stalk
10
right kidney
9
hematopoietic multipotent progenitor cell
9
left kidney
9
pericyte cell
9
renal cortex interstitium
9
renal pelvis
8
B cell
8
GM12878
8
H9
8
adipose tissue
8
psoas muscle
8
spinal cord
8
spleen
7
endothelial cell
7
heart left ventricle
7
lymphocyte
7
sigmoid colon
7
smooth muscle cell
7
trophoblast cell
6
MCF-7
6
dendritic cell
6
olfactory receptor cell
6
ovary
5
CD8-positive, alpha-beta T cell
5
CD8-positive, alpha-beta memory T cell
5
adipocyte
5
body of pancreas
5
gastrocnemius medialis
5
heart right ventricle
5
mononuclear cell
5
muscle of trunk
5
natural killer cell
5
neural progenitor cell
5
pancreas
5
thyroid gland
5
transverse colon
4
CyT49
4
HUES8
4
aorta
4
chorionic villus
4
endothelial cell of umbilical vein
4
fibroblast
4
foreskin keratinocyte
4
iPSC derived cell line
4
macrophage
4
mesenchymal stem cell
4
pancreatic delta cell
3
CD4-positive, alpha-beta T cell
3
CD4-positive, alpha-beta memory T cell
3
HCT116
3
HepG2
3
Peyer's patch
3
SK-N-SH
3
T cell
3
astrocyte
3
breast epithelium
3
cardiomyocytes (cardiac muscle cell)
3
caudate nucleus
3
colon epithelial cell
3
coronary artery
3
endocrine pancreas
3
endometrium adenocarcinoma
3
esophagus
3
fibroblast of cardiac tissue
3
foreskin fibroblast
3
hepatocyte
3
immortal human breast epithelial cell line cell
3
keratinocyte
3
layer of hippocampus
3
luminal epithelial cell of mammary gland
3
mammary gland epithelial cell
3
mesendoderm
3
monocyte
3
neurosphere
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic ductal cell
3
regulatory T cell
3
retina
3
skin fibroblast
3
testis
3
tibial nerve
3
trophoblast
3
type B pancreatic cell
3
upper lobe of left lung
2
A673
2
Ammon's horn
2
BJAB cell
2
Brodmann (1909) area 46
2
CD4-positive helper T cell
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
H7-hESC
2
HAP-1
2
HT-29
2
IMR-90
2
Jurkat
2
KARPAS-422 cell
2
LNCaP clone FGC
2
LoVo cell
2
MCF 10A cell
2
MM.1S
2
NAMALWA cell
2
OCI-LY7
2
SK-N-DZ
2
T-cell
2
T-helper 1 cell
2
T-helper 2 cell
2
T47D
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
angular gyrus
2
ascending aorta
2
bipolar neuron
2
blood vessel smooth muscle cell
2
cardiac muscle cell
2
cerebellum
2
chorion membrane
2
cingulate gyrus
2
colonic mucosa
2
cortical cell of adrenal gland
2
dermis blood vessel endothelial cell
2
duodenal mucosa
2
endodermal cell
2
enteric smooth muscle cell
2
erythroblast
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
fibroblast of breast
2
fibroblast of dermis
2
fibroblast of lung
2
frontal cortex
2
gabaergic neuron
2
glutamatergic neuron
2
iPS DF 19.11
2
kidney tubule cell
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
lymphocyte of B lineage (iPSC)
2
megakaryocyte
2
memory B cell
2
mucosa of rectum
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
naive B cell
2
naive T cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
omental fat pad
2
parathyroid adenoma
2
prostate gland
2
right atrium auricular region
2
right cardiac atrium
2
right renal cortex interstitium
2
right renal pelvis
2
skeletal muscle myoblast
2
skeletal muscle satellite cell
2
skeletal muscle tissue
2
smooth muscle cell of the esophagus
2
stomach smooth muscle
2
substantia nigra
2
temporal lobe
2
thoracic aorta
2
tibial artery
2
tongue
2
type II pneumocyte
Organ
2
extraembryonic component
Life stage
2
embryonic
unknown
Date released
2
September, 2022
1
January, 2021
1
May, 2020
1
May, 2021
Software used
2
r
1
abc
1
chicago
1
cicero
Lab
3
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
1
Kyle Gaulton, UCSD
Project
4
AMP
1
T1D
RFA
4
AMP
1
T1D
relevant_life_stage!
unknown
Showing 5 of 5 results
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Download
FileSet
DSR379TFJ
released
Annotation file set
: Target gene predictions for BSS00212 chorion membrane from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR660CFJ
released
Annotation file set
: Target gene predictions for BSS00211 chorion membrane from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR303OXY
released
Annotation file set
: enhancer-gene predicton of THP-1_monocyte-VanBortle2017 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR158NKH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of classical_monocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR499JJX
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of monocyte
Lab:
AMP-T2D consortium
Project:
AMP