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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
2
target gene predictions
Annotation Category
3
cis-regulatory elements
2
Target gene links
Annotation type Category
89
ChIP-seq
20
RNA-seq
16
ATAC-seq
3
DNase-seq
2
snATAC-seq
1
DNA methylation profiling by array assay
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
5
bed bed3+
1
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
4
primary cell
1
cell line
Biosample term
64
stomach
62
heart
51
muscle of arm
49
lung
48
brain
47
kidney
46
small intestine
45
adrenal gland
43
muscle of leg
42
large intestine
42
placenta
41
A549
41
common myeloid progenitor, CD34-positive
41
muscle of back
39
left lung
34
right lung
33
thymus
32
right kidney
31
renal cortex interstitium
31
renal pelvis
30
hematopoietic multipotent progenitor cell
29
B cell
27
CD14-positive monocyte
27
left kidney
23
CD4-positive, alpha-beta memory T cell
23
spinal cord
22
fibroblast
22
liver
22
spleen
19
endothelial cell
19
heart left ventricle
19
macrophage
17
T cell
16
MCF-7
16
foreskin keratinocyte
16
sigmoid colon
16
trophoblast cell
15
CD8-positive, alpha-beta memory T cell
15
K562
15
smooth muscle cell
14
adipocyte
14
adipose tissue
14
body of pancreas
14
gastrocnemius medialis
14
natural killer cell
14
ovary
14
transverse colon
13
CD8-positive, alpha-beta T cell
13
mononuclear cell
13
muscle of trunk
13
pancreas
13
psoas muscle
13
thyroid gland
12
chorionic villus
12
endothelial cell of umbilical vein
12
excitatory neuron
12
pericyte cell
12
retina
12
tibial nerve
11
Peyer's patch
11
astrocyte
11
cardiac muscle cell
11
caudate nucleus
11
endocrine pancreas
11
foreskin fibroblast
11
heart right ventricle
11
hepatocyte
11
mesenchymal stem cell
11
regulatory T cell
10
T-helper 1 cell
10
fibroblast of cardiac tissue
10
fibroblast of lung
10
left renal cortex interstitium
10
left renal pelvis
10
neurosphere
10
pancreatic alpha cell
10
pancreatic beta cell
10
pituitary stalk
10
right renal pelvis
10
testis
10
upper lobe of left lung
9
CD4-positive, alpha-beta T cell
9
H9
9
HeLa-S3
9
breast epithelium
9
esophagus squamous epithelium
9
keratinocyte
9
layer of hippocampus
9
mammary gland epithelial cell
9
neural progenitor cell
9
pancreatic delta cell
9
skeletal muscle myoblast
9
skeletal muscle tissue
8
T-helper 17 cell
8
T-helper 2 cell
8
ascending aorta
8
coronary artery
8
dermis blood vessel endothelial cell
8
epithelial cell of prostate
8
esophagus muscularis mucosa
8
fibroblast of dermis
8
lower leg skin
8
omental fat pad
8
pancreatic acinar cell
8
pancreatic ductal cell
8
skeletal muscle satellite cell
7
SK-N-DZ
7
SK-N-SH
7
bronchial epithelial cell
7
chorion membrane
7
eye
7
frontal cortex
7
kidney tubule cell
7
osteoblast
7
right atrium auricular region
7
right renal cortex interstitium
7
temporal lobe
6
22Rv1
6
T-cell
6
WI38
6
angular gyrus
6
aorta
6
cerebellum
6
choroid plexus epithelial cell
6
cingulate gyrus
6
colonic mucosa
6
dendritic cell
6
duodenal mucosa
6
endodermal cell
6
endometrium adenocarcinoma
6
enterocyte
6
erythroblast
6
esophagus
6
fibroblast of breast
6
foreskin melanocyte
6
gastroesophageal sphincter
6
globus pallidus
6
glomerular endothelial cell
6
glomerular visceral epithelial cell
6
hepatic stellate cell
6
immortal human breast epithelial cell line cell
6
limb
6
mucosa of rectum
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
naive T cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
neutrophil
6
parathyroid adenoma
6
putamen
6
skeletal muscle fiber
6
skin fibroblast
6
substantia nigra
6
tibial artery
6
tongue
5
cardiac fibroblast
5
Ammon's horn
5
GM12878
5
HAP-1
5
HEK293
5
HT-29
5
HepG2
5
IMR-90
5
LNCaP clone FGC
5
MM.1S
5
NAMALWA cell
5
OCI-LY7
5
PC-9
5
T47D
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
bipolar neuron
5
colon epithelial cell
5
epithelial cell of esophagus
5
epithelial cell of proximal tubule
5
inhibitory neuron
5
kidney epithelial cell
5
kidney glomerular epithelial cell
5
left cardiac atrium
5
mammary epithelial cell
5
medulla oblongata
5
mesendoderm
5
mesodermal cell
5
midbrain
5
middle frontal gyrus
5
monocyte
5
neural cell
5
occipital lobe
5
prostate gland
5
renal cortical epithelial cell
5
retinal pigment epithelial cell
5
stomach smooth muscle
5
thoracic aorta
5
trophoblast
5
urinary bladder
5
uterus
4
A172
4
A673
4
ACHN
Date released
2
January, 2021
2
June, 2020
1
May, 2021
Software used
3
macs
1
abc
1
cicero
Lab
2
AMP-T2D consortium
2
Kyle Gaulton, UCSD
1
Jesse Engreitz, Stanford University
Project
3
AMP
2
T1D
RFA
3
AMP
2
T1D
Showing 5 of 5 results
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Download
FileSet
DSR303OXY
released
Annotation file set
: enhancer-gene predicton of THP-1_monocyte-VanBortle2017 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR505TCS
released
Annotation file set
: Accessible chromatin annotation for Blood Monocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR669PBL
released
Annotation file set
: Accessible chromatin annotation for Blood Monocytes-CD14+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR158NKH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of classical_monocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR234HXR
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of classical_monocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D