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Schema
Citing CMDGA
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Annotation type
3
eQTL
1
sQTL
Annotation Category
Gene expression levels
4
Genetic variant effects
Annotation type Category
4
RNA-seq
File set status
4
released
Genome assembly (visualization)
hg19
100
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
9
islet of Langerhans
8
macrophage
6
lymphoblastoid cell line
4
monocyte
3
blood cell
3
putamen
3
skin of body
CD4-positive helper T cell
2
T cell
2
adipose-derived stem cell
2
articular chondrocyte
2
brain
2
caudate nucleus
2
coronary artery
2
differentiating adipose-derived stem cell
2
fibroblast
2
iPSC derived cell line
2
liver
2
muscle
2
regulatory T cell
2
subcutaneous adipose tissue
2
substantia nigra
1
HepG2
1
Leydig cell
1
Pancreatic islets
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
T follicular helper cell
1
T-helper 1 cell
1
T-helper 17 cell
1
T-helper 2 cell
1
abdominal aorta artery
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
adipose tissue
1
adrenal gland
1
amygdala
1
anterior cingulate cortex
1
breast
1
cerebellar hemisphere
1
cerebellum
1
colon sigmoid
1
cortex
1
cortex of kidney
1
dorsolateral prefrontal cortex
1
embryonic stem cell
1
endothelial cell
1
endothelial cell of umbilical vein
1
esophagus
1
esophagus mucosa
1
esophagus muscularis mucosa
1
fat cell
1
fibroblast of the aortic adventitia
1
frontal cortex
1
globus pallidus
1
glomerular endothelial cell
1
heart left ventricle
1
helper T cell
1
hepatic stellate cell
1
hypothalamus
1
kidney capillary endothelial cell
1
kidney glomerular epithelial cell
1
layer of hippocampus
1
left renal cortex interstitium
1
lung
1
medulla oblongata
1
microglial cell
1
midbrain
1
middle frontal gyrus
1
minor salivary gland
1
myocyte
1
naive B cel
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
natural killer cell
1
neural progenitor cell
1
neuron cell of Hypothalamus (neuron)
1
neutrophil
1
nucleus accumbens
1
omental fat pad
1
ovary
1
pancreas
1
pituitary gland
1
placenta
1
pons
1
prostate gland
1
retina
1
right atrium auricular region
1
right kidney
1
right renal cortex interstitium
1
sensory neuron
1
skeletal muscle myoblast
1
small intestine
1
smooth muscle cell of the coronary artery
1
spinal cord
1
spleen
1
stomach
1
superior temporal gyrus
1
testis
1
thyroid gland
1
tibial artery
1
tibial nerve
1
transverse colon
1
uterus
1
vagina
1
visceral abdominal adipose tissue
Life stage
1
adult
Date released
3
January, 2022
1
May, 2021
Software used
3
qTLtools
1
limix
1
sqtlseeker
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
assembly!
hg19
biosample_term_name!
CD4-positive helper T cell
annotation_category!
Gene expression levels
Showing 4 of 4 results
table-tab-icon
matrix-icon
FileSet
DSR338LAI
released
Annotation file set
: monocyte naive eQTL of studay Schmiedel_2018 from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR085HYL
released
Annotation file set
: monocyte CD16 naive eQTL of studay Schmiedel_2018 from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR583OYR
released
Annotation file set
: monocyte eQTL of studay BLUEPRINT from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR337BHM
released
Annotation file set
: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (CD14+ monocytes) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP