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Citing CMDGA
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Annotation type
3
target gene predictions
Annotation Category
105
cis-regulatory elements
8
Genetic variant effects
3
Target gene links
Annotation type Category
1
ATAC-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
1
snATAC-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
cell line
Biosample term
52
HeLa-S3
38
H1-hESC
19
HFFc6
17
K562
15
CD14-positive monocyte
10
pituitary stalk
9
pericyte cell
7
GM12878
7
H9
7
endothelial cell
6
dendritic cell
6
lymphocyte
6
olfactory receptor cell
6
smooth muscle cell
5
CD8-positive, alpha-beta T cell
4
CyT49
4
HUES8
4
adipocyte
4
fibroblast
4
iPSC derived cell line
4
macrophage
4
pancreatic delta cell
4
psoas muscle
3
CD4-positive, alpha-beta T cell
3
adrenal gland
3
astrocyte
3
cardiomyocytes (cardiac muscle cell)
3
colon epithelial cell
3
keratinocyte
3
liver
3
monocyte
3
pancreas
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic ductal cell
3
thymus
3
type B pancreatic cell
2
B cell
2
BJAB cell
2
CD4-positive helper T cell
2
HCT116
2
HepG2
2
Jurkat
2
MCF 10A cell
2
T-cell
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
adipose tissue
2
aorta
2
blood vessel smooth muscle cell
2
cortical cell of adrenal gland
2
endothelial cell of umbilical vein
2
enteric smooth muscle cell
2
erythroblast
2
gabaergic neuron
2
glutamatergic neuron
2
heart left ventricle
2
heart right ventricle
2
hepatocyte
2
luminal epithelial cell of mammary gland
2
lymphocyte of B lineage (iPSC)
2
megakaryocyte
2
memory B cell
2
mesenchymal stem cell
2
mesendoderm
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell
2
ovary
2
sigmoid colon
2
small intestine
2
smooth muscle cell of the esophagus
2
spleen
2
stomach
2
trophoblast cell
2
type II pneumocyte
1
A549
1
A673
1
Ammon's horn
1
B cell, CD19-positive
1
B-lymphoblastoid cell line
1
CD56-positive, CD161-positive immature natural killer cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
EndoC_BH1
1
GM18486
1
GM18505
1
GM18507
1
GM18508
1
GM18516
1
GM18522
1
GM19099
1
GM19141
1
GM19193
1
GM19204
1
GM19238
1
GM19239
1
GM19240
1
H7-hESC
1
HAP-1
1
HCT-116 cell
1
HT-29
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
IMR-90
1
KARPAS-422 cell
1
LNCAP
1
LoVo cell
1
MCF-7
1
MDA-MB-231 cell
1
MM.1S
1
NCCIT cell
1
OCI-LY7
1
PC-9
1
Panc1
1
SK-N-SH
1
activated CD8-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
alveolar macrophage
1
basal cell
1
basal cell of epidermis
1
beige adipocyte
1
bipolar neuron
1
bladder (urinary bladder)
1
body of pancreas
1
breast epithelium
1
cardiac endothelial cell
1
cardiac muscle cell
1
cardiac precursors (cardiac muscle cell)
1
cardiac ventricle
1
cell
1
ciliated cell
1
club cell
1
colon goblet cell
1
common myeloid progenitor, CD34-positive
1
conventional dendritic cell
1
coronary artery
1
dorsolateral prefrontal cortex
1
eccrine cell
1
embryonic stem cell
1
endocardial cell
1
endothelial cell of lymphatic vessel
1
enteric neuron
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
epithelial cell of prostate
1
esophagus
1
fat cell
1
fibroblast cell line
1
fibroblast of arm
1
fibroblast of cardiac tissue
1
fibroblast of dermis
1
fibroblast of lung
1
foreskin fibroblast
1
foveolar cell of stomach
1
gastric (mucosa of stomach)
1
gastrocnemius medialis
1
granular cell of epidermis
1
heart
1
iPS DF 19.11
1
induced pluripotent stem cell
1
inflammatory macrophage
1
intestinal tuft cell
1
islet of Langerhans
1
large intestine
1
lung
1
luteal cell
1
mammary epithelial cell
1
mammary gland epithelial cell
1
mast cell
1
mature NK T cell
1
megakaryocyte-erythroid progenitor cell
1
melanocyte
1
mesothelial cell
1
microglial cell
1
muscle of leg
1
muscle of trunk
1
myoepithelial cell
1
myotube
1
naive t cell
1
natural killer cell mediated cytotoxicity
1
neural progenitor cell
1
neuronal stem cell
1
neutrophil
1
non keratinizing barrier epithelial cell
1
non-classical monocyte
1
oligodendrocyte
1
oligodendrocyte precursor cell
1
osteoblast
1
pancreatic polypeptide-secreting cell
1
pancreatic stellate cell
1
paneth cell
1
parietal cell
1
peptic cell
1
placenta
Date released
1
January, 2021
1
May, 2020
1
May, 2021
Software used
1
abc
1
chicago
1
cicero
Lab
1
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
1
Kyle Gaulton, UCSD
Project
2
AMP
1
T1D
RFA
2
AMP
1
T1D
software_used.software.name!
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Showing 3 of 3 results
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Download
FileSet
DSR303OXY
released
Annotation file set
: enhancer-gene predicton of THP-1_monocyte-VanBortle2017 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR158NKH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of classical_monocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR499JJX
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of monocyte
Lab:
AMP-T2D consortium
Project:
AMP