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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
accessible chromatin
2
gene expression
2
target gene predictions
eQTL
Annotation Category
4
cis-regulatory elements
2
Gene expression levels
2
Target gene links
Annotation type Category
ChIP-seq
11
DNase-seq
3
snATAC-seq
2
ATAC-seq
2
scRNA-seq
1
H3K27ac ChIP-Seq
Available data
6
bed bed3+
3
bigWig
2
tsv
1
txt
File set status
8
released
Genome assembly (visualization)
6
hg19
Organism
7
Homo sapiens
Biosample type
7
primary cell
1
in vitro differentiated cells
Biosample term
52
HeLa-S3
47
H1-hESC
38
monocyte
37
endothelial cell
26
fibroblast
26
islet of Langerhans
25
hepatocyte
25
retina
23
macrophage
21
EndoC_BH1
21
pancreatic ductal cell
20
pigmented layer of retina
20
smooth muscle cell
19
HFFc6
19
pericyte cell
18
K562
18
epithelial cell of proximal tubule
18
kidney
18
neural progenitor cell
18
pancreatic beta cell
17
glomerular endothelial cell
17
induced pluripotent stem cell
17
pancreatic acinar cell
17
pancreatic alpha cell
16
pancreatic delta cell
15
CD14-positive monocyte
14
excitatory neuron
13
CD8-positive, alpha-beta T cell
13
adipocyte
13
regulatory T cell
12
B cell
12
astrocyte
12
subcutaneous adipose tissue
11
cardiomyocytes
11
coronary artery
11
heart
10
T-helper 1 cell
10
endothelial cell of hepatic sinusoid
10
liver
10
pancreatic stellate cell
10
pituitary stalk
10
right atrium auricular region
10
tibial nerve
9
T cell
9
T-helper 17 cell
9
extended pluripotent stem (EPS) cells
9
glomerular visceral epithelial cell
9
memory B cell
9
pancreas
9
progenitor cell of endocrine pancreas
9
retinal pigment epithelial cell
9
skeletal muscle fiber
9
tibial artery
8
GM12878
8
adipose tissue
8
cardiomyocytes (cardiac muscle cell)
8
embryonic stem cell
8
frontal cortex
8
glutamatergic neuron
8
heart left ventricle
8
naive thymus-derived CD8-positive, alpha-beta T cell
8
natural killer cell
8
osteoblast
8
skeletal muscle satellite cell
7
Ammon's horn
7
H9
7
body of pancreas
7
caudate nucleus
7
dendritic cell
7
erythroblast
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
mesangial cell
7
mesenchymal stem cell
7
omental fat pad
7
putamen
6
CD4-positive helper T cell
6
SGBS preadipocytes
6
ascending aorta
6
cardiac precursors (cardiac muscle cell)
6
cerebellum
6
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
6
gamma-delta T cell
6
keratinocyte
6
lymphocyte
6
naive B cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
6
stomach
6
type I muscle cell
6
type II muscle cell
6
type II pneumocyte
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
HUES8
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T-helper 2 cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
adrenal gland
5
basal cell
5
cardiac muscle cell
5
central memory CD8-positive, alpha-beta T cell
5
cerebellum (Hemisphere)
5
chondrocyte
5
effector memory CD8-positive, alpha-beta T cell
5
endothelial cell of umbilical vein
5
fibroblast of cardiac tissue
5
gabaergic neuron
5
heart right ventricle
5
hepatic stellate cell
5
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
pancreatic endothelial cell
5
psoas muscle
5
skeletal muscle myoblast
5
smooth muscle cell of the coronary artery
5
spleen
4
C1 segment of cervical spinal cord
4
CD4-positive, alpha-beta T cell
4
CyT49
4
HepG2
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
Schwann cell
4
T follicular helper cell
4
adult endothelial progenitor cell
4
amygdala
4
anterior cingulate cortex
4
blood vessel smooth muscle cell
4
bone tissue
4
brain
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
gastrocnemius medialis(Muscle - Skeletal)
4
hypothalamus
4
iPSC derived cell line
4
kidney connecting tubule epithelial cell
4
kidney glomerular epithelial cell
4
left ventricle myocardium
4
leukocyte
4
luminal epithelial cell of mammary gland
4
mammary gland epithelial cell
Life stage
2
adult
Date released
2
January, 2021
1
April, 2020
1
August, 2021
1
February, 2021
1
June, 2020
1
May, 2020
1
May, 2021
Software used
2
macs
2
r
1
abc
1
cicero
1
seurat
Lab
3
AMP-T2D consortium
2
Kyle Gaulton, UCSD
1
Jesse Engreitz, Stanford University
1
Katalin Susztak, Upenn
1
Xin Sun, UCSD
Project
5
AMP
2
T1D
1
LungMap
RFA
4
AMP
2
T1D
1
AMP2
1
LungMap2
annotation_type_category!
ChIP-seq
annotation_type!
eQTL
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR382SMZ
released
Annotation file set
: ATAC-seq peaks in NK cells from lung snATAC-seq
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR962TNF
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for natural killer cell
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR598LAB
released
Annotation file set
: enhancer-gene predicton of natural_killer_cell-Corces2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR725TSR
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of liver NK-likecells from GSE115469 scRNA-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR888CSC
released
Annotation file set
: Accessible chromatin annotation for Blood CD56+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR397SUR
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of adaptive_NK
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR197KBT
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of adaptive_NK
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR920YKW
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of normal natural killer cell
Lab:
AMP-T2D consortium
Project:
AMP