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Schema
Citing CMDGA
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Annotation type
17
histone modifications
16
candidate regulatory elements
14
target gene predictions
12
chromatin state
8
gene expression
4
accessible chromatin
4
binding sites
1
eQTL
1
variant allelic effects
Annotation Category
4
cis-regulatory elements
Annotation type Category
ATAC-seq
2
DNase-seq
2
snATAC-seq
Available data
4
bed bed3+
4
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
3
GRCh38
Organism
4
Homo sapiens
Biosample type
2
primary cell
2
tissue
Biosample term
16
fibroblast
15
endothelial cell
13
macrophage
12
excitatory neuron
10
pericyte cell
9
smooth muscle cell
7
T cell
7
astrocyte
7
pancreatic ductal cell
6
B cell
6
pancreatic acinar cell
6
pancreatic alpha cell
6
pancreatic beta cell
5
erythroblast
5
inhibitory neuron
5
pancreatic delta cell
5
skeletal muscle fiber
5
skeletal muscle satellite cell
4
fibroblast of cardiac tissue
4
heart
4
pancreas
4
pancreatic stellate cell
4
type II pneumocyte
3
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
3
adipocyte
3
colon epithelial cell
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
hepatic stellate cell
3
hepatocyte
3
kidney
3
mesenchymal stem cell
3
monocyte
3
natural killer cell
3
osteoblast
3
regulatory T cell
3
retinal pigment epithelial cell
3
skin fibroblast
3
stomach
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
Ammon's horn
2
Muller cell
2
Rh-4 cell
2
acute myeloid leukemia cell
2
basal cell
2
blood vessel smooth muscle cell
2
bone marrow cell
2
brain
2
brain pericyte
2
capillary endothelial cell
2
caudate nucleus
2
choroid plexus epithelial cell
2
ciliated cell
2
club cell
2
endocardial cell
2
endothelial cell of hepatic sinusoid
2
endothelial cell of umbilical vein
2
enteric neuron
2
enteric smooth muscle cell
2
erythroid cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
frontal cortex
2
gabaergic neuron
2
glial cell
2
globus pallidus
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
glutamatergic neuron
2
heart left ventricle
2
islet of Langerhans
2
keratinocyte
2
kidney tubule cell
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mammary gland epithelial cell
2
medulla oblongata
2
megakaryocyte
2
memory B cell
2
mesangial cell
2
mesothelial cell
2
midbrain
2
muscle of leg
2
occipital lobe
2
oligodendrocyte precursor cell
2
pancreatic polypeptide-secreting cell
2
pons
2
putamen
2
renal cortical epithelial cell
2
renal pelvis
2
retina
2
right atrium auricular region
2
schwann cell
2
skeletal muscle myoblast
2
smooth muscle cell of the esophagus
2
spinal cord
2
superior temporal gyrus
2
tibial artery
2
tibial nerve
1
hindlimb muscle
1
786-O cell
1
A-673 cell
1
A172
1
A549
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
B-Lymphocytes
1
B-lymphocyte
1
BE(2)-C
1
BJ cell
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CD4-positive helper T cell
1
CD4-positive, alpha-beta T cell
1
CMK
1
COLO-829 cell
1
COLO205
1
Caco-2 cell
1
Caki2
1
D341 Med cell
1
DG-75 cell
1
Daoy
1
ECC-1
1
G-401 cell
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM12878
1
GM13976
1
GM13977
1
GM18507
1
GM19240
1
GM20000
1
GM23248
1
GP5d
1
Glioblastoma
1
H1-hESC
1
H4
1
H7-hESC
1
HAC cell
1
HAP-1
1
HBMEC cell
1
HCT-116 cell
1
HEK293
1
HGF
1
HL-60
1
HT-29
1
HUES6
1
HUES8
1
HeLa cell
1
HepG2
1
Hodgkin lymphoma cell line
1
HuH-7
1
HuTu-80 cell
1
IMR-90
1
Ishikawa
1
Jurkat
1
K562
1
KARPAS-422 cell
1
KBM-7
1
Kasumi-1
1
L-1236 cell
1
L-428 cell
1
L1-S8
1
L1-S8R
1
LHCN-M2
1
LNCAP
1
LoVo cell
1
M059J
1
MCF-7
1
MCF10A-Er-Src cell
1
MDA-MB-231 cell
1
MG63
1
MM.1S
1
MOLM-13 cell
1
Myoblasts
1
NAMALWA cell
1
NB-4 cell
1
NCCIT cell
1
NCI-H226 cell
1
NHBE cell
1
NHDF cell
1
NHEK
1
NT2-D1 cell
1
Normal Human Astrocytes
1
OCI-AML3
Organ
2
bone element
2
bone marrow
2
heart
Life stage
1
adult
1
fetal
Date released
2
January, 2020
1
January, 2021
1
November, 2021
Software used
4
macs
Lab
2
AMP-T2D consortium
1
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Project
2
AMP
1
ENCODE
1
T1D
RFA
2
AMP
1
ENCODE3
1
T1D
annotation_type_category!
ATAC-seq
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR326TXQ
released
Annotation file set
: Accessible chromatin annotation of Fetal Megakaryocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR213MXZ
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of megakaryocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR193GSB
released
Annotation file set
: Accessible chromatin annotation of heart left ventricle fetal from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR231CTC
released
Annotation file set
: Accessible chromatin annotation of heart left ventricle adult from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP