Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
binding sites
2
accessible chromatin
1
gene expression
1
histone modifications
1
variant allelic effects
0
candidate regulatory elements
Annotation Category
2
cis-regulatory elements
Annotation type Category
2
snATAC-seq
Available data
2
bed bed3+
1
bigWig
File set status
2
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
2
Homo sapiens
Biosample type
in vitro differentiated cells
2
primary cell
Biosample term
43
stomach
42
heart
39
kidney
34
muscle of arm
33
lung
31
brain
30
small intestine
29
adrenal gland
29
muscle of leg
29
retina
28
large intestine
28
muscle of back
27
common myeloid progenitor, CD34-positive
27
placenta
26
left lung
23
right lung
22
A549
21
renal cortex interstitium
21
renal pelvis
21
right kidney
21
thymus
20
B cell
20
pigmented layer of retina
18
left kidney
18
monocyte
17
liver
17
spleen
16
endothelial cell
16
fibroblast
16
spinal cord
14
CD4-positive, alpha-beta memory T cell
14
heart left ventricle
13
macrophage
12
excitatory neuron
11
CD8-positive, alpha-beta T cell
11
foreskin keratinocyte
11
pericyte cell
11
sigmoid colon
10
MCF-7
10
T cell
10
astrocyte
10
pancreas
10
regulatory T cell
9
CD4-positive, alpha-beta T cell
9
T-helper 1 cell
9
adipose tissue
9
gastrocnemius medialis
9
hepatocyte
9
natural killer cell
9
ovary
9
smooth muscle cell
9
thyroid gland
9
tibial nerve
9
transverse colon
8
CD14-positive monocyte
8
CD8-positive, alpha-beta memory T cell
8
EndoC_BH1
8
K562
8
Peyer's patch
8
body of pancreas
8
chorionic villus
8
endothelial cell of umbilical vein
8
foreskin fibroblast
8
muscle of trunk
8
pancreatic beta cell
8
pancreatic ductal cell
8
psoas muscle
8
testis
8
trophoblast cell
8
upper lobe of left lung
7
H9
7
T-helper 17 cell
7
T-helper 2 cell
7
caudate nucleus
7
endocrine pancreas
7
esophagus squamous epithelium
7
fibroblast of cardiac tissue
7
heart right ventricle
7
islet of Langerhans
7
left renal cortex interstitium
7
left renal pelvis
7
mononuclear cell
7
neurosphere
7
omental fat pad
7
osteoblast
7
pancreatic acinar cell
7
pancreatic alpha cell
7
right renal pelvis
7
skeletal muscle satellite cell
6
breast epithelium
6
coronary artery
6
dermis blood vessel endothelial cell
6
endothelial cell of hepatic sinusoid
6
esophagus muscularis mucosa
6
fibroblast of lung
6
glutamatergic neuron
6
layer of hippocampus
6
lower leg skin
6
right atrium auricular region
6
right renal cortex interstitium
6
skeletal muscle myoblast
6
skeletal muscle tissue
6
tibial artery
5
HeLa-S3
5
SK-N-DZ
5
WI38
5
ascending aorta
5
bronchial epithelial cell
5
epithelial cell of prostate
5
erythroblast
5
eye
5
gastroesophageal sphincter
5
glomerular visceral epithelial cell
5
inhibitory neuron
5
keratinocyte
5
kidney tubule cell
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
pancreatic delta cell
5
parathyroid adenoma
5
prostate gland
5
retinal pigment epithelial cell
5
skeletal muscle fiber
5
subcutaneous abdominal adipose tissue
5
substantia nigra
5
temporal lobe
5
thoracic aorta
5
tongue
5
trophoblast
4
22Rv1
4
Ammon's horn
4
HEK293
4
HepG2
4
SK-N-SH
4
T-cell
4
angular gyrus
4
aorta
4
cerebellum
4
chorion membrane
4
choroid plexus epithelial cell
4
cingulate gyrus
4
colon epithelial cell
4
colonic mucosa
4
duodenal mucosa
4
esophagus
4
fibroblast of breast
4
fibroblast of dermis
4
foreskin melanocyte
4
frontal cortex
4
globus pallidus
4
glomerular endothelial cell
4
hepatic stellate cell
4
kidney glomerular epithelial cell
4
limb
4
mammary epithelial cell
4
mammary gland epithelial cell
4
memory B cell
4
mucosa of rectum
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
neutrophil
4
pancreatic stellate cell
4
peripheral blood mononuclear cell
4
putamen
4
renal cortical epithelial cell
4
skin fibroblast
4
stomach smooth muscle
4
subcutaneous adipose tissue
4
type II pneumocyte
4
urinary bladder
4
uterus
4
vagina
3
cardiac fibroblast
3
A172
3
ACHN
3
CD1c-positive myeloid dendritic cell
3
CMK
3
Caki2
3
Daoy
3
GM04503
3
GM04504
3
GM06990
3
GM10248
3
GM10266
3
GM12864
3
GM12865
3
GM12878
3
GM23248
3
H4
3
HAP-1
3
HL-60
3
HT-29
3
HUES6
3
IMR-90
3
KBM-7
3
L1-S8
3
LHCN-M2
3
LNCAP
3
LNCaP clone FGC
3
M059J
Organ
2
connective tissue
Date released
1
February, 2024
1
November, 2021
Software used
2
macs
Lab
1
Bing Ren, UCSD
1
Stephen Parker, UMich
Project
1
AMP
1
ENCODE
RFA
1
AMP2
1
ENCODE3
biosample_type!
in vitro differentiated cells
Showing 2 of 2 results
table-tab-icon
matrix-icon
Download
FileSet
DSR987PCG
released
Annotation file set
: Accessible chromatin annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP