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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
17
histone modifications
10
accessible chromatin
7
gene expression
5
binding sites
3
candidate regulatory elements
1
target gene predictions
0
chromatin state
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
ChIP-seq
3
DNase-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
2
cell line
1
in vitro differentiated cells
Biosample term
21
stomach
20
heart
17
kidney
17
lung
17
muscle of arm
16
muscle of leg
15
brain
15
large intestine
15
muscle of back
14
adrenal gland
14
common myeloid progenitor, CD34-positive
14
small intestine
13
left lung
12
placenta
11
CD4-positive, alpha-beta T cell
11
renal cortex interstitium
11
right lung
10
renal pelvis
10
right kidney
9
heart left ventricle
9
hematopoietic multipotent progenitor cell
9
left kidney
9
spleen
9
thymus
8
CD8-positive, alpha-beta T cell
8
liver
7
endothelial cell of umbilical vein
7
foreskin keratinocyte
7
mature neutrophil
7
spinal cord
6
B cell
6
H9
6
adipocyte
6
left cardiac atrium
6
subcutaneous abdominal adipose tissue
6
temporal lobe
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive, alpha-beta memory T cell
5
cardiac muscle cell
5
embryonic stem cell
5
foreskin fibroblast
5
heart right ventricle
5
sigmoid colon
4
CD14-positive monocyte
4
MCF-7
4
Peyer's patch
4
T-cell
4
WI38
4
alternatively activated macrophage
4
angular gyrus
4
aorta
4
body of pancreas
4
chorionic villus
4
dermis blood vessel endothelial cell
4
esophagus squamous epithelium
4
fibroblast of lung
4
gastrocnemius medialis
4
gastroesophageal sphincter
4
layer of hippocampus
4
left renal cortex interstitium
4
left renal pelvis
4
lower leg skin
4
mammary epithelial cell
4
muscle of trunk
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
neurosphere
4
ovary
4
pancreas
4
peripheral blood mononuclear cell
4
right renal pelvis
4
substantia nigra
4
testis
4
thyroid gland
4
tibial nerve
4
transverse colon
4
trophoblast cell
4
upper lobe of left lung
3
A549
3
MCF 10A
3
T-helper 1 cell
3
ascending aorta
3
breast epithelium
3
cardiac fibroblast
3
caudate nucleus
3
cingulate gyrus
3
colonic mucosa
3
duodenal mucosa
3
endocrine pancreas
3
esophagus muscularis mucosa
3
foreskin melanocyte
3
inflammatory macrophage
3
islet of Langerhans
3
mesenchymal stem cell
3
mesodermal cell
3
mucosa of rectum
3
natural killer cell
3
omental fat pad
3
parathyroid adenoma
3
psoas muscle
3
retina
3
right cardiac atrium
3
right renal cortex interstitium
3
skeletal muscle myoblast
3
skeletal muscle tissue
3
stomach smooth muscle
3
subcutaneous adipose tissue
3
suprapubic skin
3
thoracic aorta
2
22Rv1
2
AG10803
2
ESC derived cell line
2
GM12878
2
HEK293
2
HeLa-S3
2
HepG2
2
K562
2
LNCAP
2
NAMALWA
2
SK-N-DZ
2
SK-N-SH
2
T-helper 17 cell
2
T-helper 2 cell
2
bronchial epithelial cell
2
cardiac myoblast
2
cardiovascular progenitor cell
2
chorion
2
coronary artery
2
dermis microvascular lymphatic vessel endothelial cell
2
endodermal cell
2
epithelial cell of prostate
2
erythroblast
2
esophagus
2
eye
2
fibroblast of breast
2
germinal matrix
2
keratinocyte
2
lung microvascular endothelial cell
2
middle frontal area 46
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
neural cell
2
neuroepithelial stem cell
2
neuronal stem cell
2
neutrophil
2
placental basal plate
2
prostate gland
2
regulatory T cell
2
skeletal muscle satellite cell
2
tibial artery
2
tongue
2
trophoblast
2
uterus
2
vagina
1
A172
1
A673
1
ACC112
1
ACHN
1
AG04449
1
AG04450
1
AG09309
1
AG09319
1
Ammon's horn
1
BE2C
1
BJ
1
BL-2 cell
1
C4-2B
1
CD1c-positive myeloid dendritic cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD8-positive, alpha-beta memory T cell
1
CMK
1
Caco-2
1
Caki2
1
D721Med
1
DG-75 cell
1
DND-41
1
DOHH2
1
Daoy
1
EH
1
EL
1
ELF-1
1
ELR
1
G401
1
GM04503
1
GM04504
1
GM06990
1
GM08714
1
GM10248
1
GM10266
1
GM12801
1
GM12864
1
GM12865
1
GM12873
1
GM12874
1
GM12875
1
GM13976
1
GM13977
1
GM20000
Organ
2
prostate gland
Life stage
2
unknown
1
embryonic
Date released
September, 2022
3
February, 2021
Software used
3
encode-ccres
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
month_released!
September, 2022
Showing 3 of 3 results
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Download
FileSet
DSR859OBP
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE neural progenitor cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR636OUZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE 22Rv1
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR910NAQ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE 22Rv1
Lab:
AMP-T2D consortium
Project:
AMP