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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
16
histone modifications
10
accessible chromatin
7
gene expression
5
candidate regulatory elements
5
target gene predictions
4
binding sites
0
chromatin state
Annotation Category
5
cis-regulatory elements
Annotation type Category
5
ChIP-seq
5
DNase-seq
Available data
5
bed bed3+
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
5
in vitro differentiated cells
Biosample term
40
stomach
37
heart
33
lung
33
muscle of arm
29
brain
29
kidney
29
small intestine
28
adrenal gland
28
muscle of back
27
common myeloid progenitor, CD34-positive
27
large intestine
27
muscle of leg
26
left lung
26
placenta
22
right lung
21
A549
20
renal cortex interstitium
20
right kidney
20
thymus
19
hematopoietic multipotent progenitor cell
19
renal pelvis
18
left kidney
15
liver
15
spleen
14
B cell
14
CD4-positive, alpha-beta memory T cell
14
spinal cord
11
CD4-positive, alpha-beta T cell
11
foreskin keratinocyte
11
heart left ventricle
10
sigmoid colon
9
MCF-7
9
trophoblast cell
8
CD14-positive monocyte
8
CD8-positive, alpha-beta T cell
8
CD8-positive, alpha-beta memory T cell
8
K562
8
adipocyte
8
body of pancreas
8
chorionic villus
8
gastrocnemius medialis
8
muscle of trunk
8
ovary
8
thyroid gland
8
transverse colon
7
H9
7
Peyer's patch
7
adipose tissue
7
endocrine pancreas
7
endothelial cell of umbilical vein
7
fibroblast of lung
7
foreskin fibroblast
7
layer of hippocampus
7
left cardiac atrium
7
mature neutrophil
7
mononuclear cell
7
neurosphere
7
psoas muscle
7
testis
7
upper lobe of left lung
6
T-helper 1 cell
6
cardiac muscle cell
6
caudate nucleus
6
dermis blood vessel endothelial cell
6
esophagus squamous epithelium
6
heart right ventricle
6
left renal cortex interstitium
6
left renal pelvis
6
lower leg skin
6
natural killer cell
6
pancreas
6
retina
6
right renal pelvis
6
skeletal muscle tissue
6
subcutaneous abdominal adipose tissue
6
substantia nigra
6
temporal lobe
6
tibial nerve
5
CD14-positive, CD16-negative classical monocyte
5
HeLa-S3
5
T-helper 17 cell
5
T-helper 2 cell
5
WI38
5
breast epithelium
5
cingulate gyrus
5
colonic mucosa
5
duodenal mucosa
5
esophagus muscularis mucosa
5
gastroesophageal sphincter
5
mucosa of rectum
5
neural progenitor cell
5
omental fat pad
5
parathyroid adenoma
5
regulatory T cell
5
right renal cortex interstitium
5
skeletal muscle myoblast
5
stomach smooth muscle
4
22Rv1
4
SK-N-DZ
4
SK-N-SH
4
T cell
4
T-cell
4
alternatively activated macrophage
4
angular gyrus
4
aorta
4
ascending aorta
4
bronchial epithelial cell
4
endodermal cell
4
epithelial cell of prostate
4
esophagus
4
eye
4
fibroblast of breast
4
fibroblast of dermis
4
foreskin melanocyte
4
keratinocyte
4
mammary epithelial cell
4
mesenchymal stem cell
4
mesodermal cell
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
neutrophil
4
peripheral blood mononuclear cell
4
prostate gland
4
thoracic aorta
4
tongue
4
trophoblast
4
vagina
3
GM12878
3
HEK293
3
HepG2
3
LNCaP clone FGC
3
MCF 10A
3
T47D
3
cardiac fibroblast
cerebellum
3
chorion membrane
3
coronary artery
3
endometrium adenocarcinoma
3
fibroblast of cardiac tissue
3
hepatocyte
3
immortal human breast epithelial cell line cell
3
inflammatory macrophage
3
islet of Langerhans
3
kidney tubule cell
3
limb
3
lung microvascular endothelial cell
3
mammary gland epithelial cell
3
naive T cell
3
neural cell
3
right atrium auricular region
3
subcutaneous adipose tissue
3
suprapubic skin
3
tibial artery
3
urinary bladder
3
uterus
2
A172
2
A673
2
ACC112
2
ACHN
2
AG10803
2
Ammon's horn
2
Brodmann (1909) area 46
2
C4-2B
2
CD1c-positive myeloid dendritic cell
2
CMK
2
Caki2
2
DND-41
2
DOHH2
2
Daoy
2
EH
2
EL
2
ELF-1
2
ELR
2
ESC derived cell line
2
G401
2
GM04503
2
GM04504
2
GM06990
2
GM08714
2
GM10248
2
GM10266
2
GM12864
2
GM12865
2
GM12875
2
GM23248
2
GM23338
2
H1-hESC
2
H4
2
H54
2
HAP-1
2
HCT116
2
HL-60
2
HS-27A
2
HS-5
2
HT-29
2
HT1080
2
HUES48
2
HUES6
Life stage
5
embryonic
Date released
4
September, 2022
1
February, 2021
Software used
4
r
1
encode-ccres
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
biosample_term_name!
cerebellum
files.file_type!
bed bed9
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR114CAK
released
Annotation file set
: Candidate regulatory elements for BSS01372 neural progenitor cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR794AQT
released
Annotation file set
: Candidate regulatory elements for BSS01371 neural progenitor cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR064BJU
released
Annotation file set
: Candidate regulatory elements for BSS01370 neural progenitor cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR913FYZ
released
Annotation file set
: Candidate regulatory elements for BSS00272 neural progenitor cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR859OBP
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE neural progenitor cell
Lab:
AMP-T2D consortium
Project:
AMP